DPOGS214382 | ||
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Transcript | DPOGS214382-TA | 567 bp |
Protein | DPOGS214382-PA | 188 aa |
Genomic position | DPSCF300020 + 938416-941272 | |
RNAseq coverage | 4311x (Rank: top 3%) |
Annotation | ||||
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Heliconius | HMEL003359 | 2e-69 | 64.02% |   |
Bombyx | BGIBMGA004009-TA | 1e-74 | 66.14% |   |
Drosophila | CG12203-PA | 1e-51 | 58.90% |   |
EBI UniRef50 | UniRef50_D6WRS0 | 3e-58 | 61.85% | NADH dehydrogenase (Ubiquinone) Fe-S protein 4 n=13 Tax=Coelomata RepID=D6WRS0_TRICA |
NCBI RefSeq | XP_975662.1 | 6e-59 | 61.85% | PREDICTED: similar to NADH:ubiquinone dehydrogenase, putative [Tribolium castaneum] |
NCBI nr blastp | gi|91087395 | 1e-57 | 61.85% | PREDICTED: similar to NADH:ubiquinone dehydrogenase, putative [Tribolium castaneum] |
NCBI nr blastx | gi|91087395 | 3e-57 | 61.85% | PREDICTED: similar to NADH:ubiquinone dehydrogenase, putative [Tribolium castaneum] |
Group | ||||
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Gene Ontology | GO:0022900 | 9e-82 | electron transport chain | |
GO:0016651 | 9e-82 | oxidoreductase activity, acting on NADH or NADPH | ||
GO:0005743 | 9e-82 | mitochondrial inner membrane | ||
KEGG pathway | tca:664573 | 2e-58 |   | |
  | K03937 (NDUFS4) | maps-> | Huntington's disease | |
  |   |   | Oxidative phosphorylation | |
  |   |   | Alzheimer's disease | |
  |   |   | Parkinson's disease | |
InterPro domain | [33-188] IPR006885 | 9e-82 | NADH dehydrogenase ubiquinone Fe-S protein 4, mitochondrial | |
Orthology group | MCL12367 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS214382-TA
ATGCTGCAAGTTATTAATACTGCGGGCAGGCTGGCTAGGTCTAATGTTTGCCGATCCTTGTTGCCATTTTCAACAAGTTCTGCAAGACCATCAGACGATCCTATGAATCGTAAGGAGGCTCCTATTCTGGACAACGAATCTGTACTAGCTCTTCCCCACCAAGTAAGGCAGAAGAAAGTCCAAGCCGCCAGCATAAATGTCCCTGTACAGGTTGACATTACACCAATAACTGGAATACCGGAGGAGCATGTGCGCACTCGCAGAGTAAGAATCTATCAGCCACCAAAGAACGCTATGCAGAGCGGCACCAACAACACCCATCATTGGGAAATGGAATTTGATAATCGCCAGCGTTGGGAGAATCCTCTCATGGGCTGGACATCAACCGGCGATCCTCACTCCAACTTGAAATTGCAATTTACCTCCCCCGACGAAGCCATACAGCATTGCGAGAAAAATGGTTGGGTGTGGTACATTGATGCTCCCAAACTTGAAAAGGAATTCAAACCCAAAAGCTATGGAATTAACTTCTCCTGGAATCGCCGCACCCGAGTATCTACTAAGTGA
>DPOGS214382-PA
MLQVINTAGRLARSNVCRSLLPFSTSSARPSDDPMNRKEAPILDNESVLALPHQVRQKKVQAASINVPVQVDITPITGIPEEHVRTRRVRIYQPPKNAMQSGTNNTHHWEMEFDNRQRWENPLMGWTSTGDPHSNLKLQFTSPDEAIQHCEKNGWVWYIDAPKLEKEFKPKSYGINFSWNRRTRVSTK-