| DPOGS214810 | ||
|---|---|---|
| Transcript | DPOGS214810-TA | 267 bp |
| Protein | DPOGS214810-PA | 88 aa |
| Genomic position | DPSCF300059 + 401803-402302 | |
| RNAseq coverage | 1034x (Rank: top 12%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL017291 | 5e-40 | 97.40% | |
| Bombyx | BGIBMGA012045-TA | 4e-39 | 92.31% | |
| Drosophila | SmF-PA | 2e-38 | 78.41% | |
| EBI UniRef50 | UniRef50_Q1HPQ7 | 1e-36 | 92.31% | Small nuclear ribonucleoprotein protein F n=7 Tax=Eukaryota RepID=Q1HPQ7_BOMMO |
| NCBI RefSeq | NP_001093276.1 | 2e-37 | 92.31% | small nuclear ribonucleoprotein protein F [Bombyx mori] |
| NCBI nr blastp | gi|332031555 | 3e-37 | 82.95% | Small nuclear ribonucleoprotein F [Acromyrmex echinatior] |
| NCBI nr blastx | gi|153792507 | 7e-42 | 93.18% | small nuclear ribonucleoprotein protein F [Bombyx mori] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0006396 | 4.3e-54 | RNA processing | |
| GO:0005634 | 4.3e-54 | nucleus | ||
| KEGG pathway | dvi:Dvir_GJ21558 | 2e-36 | ||
| K11098 (SNRPF, SMF) | maps-> | Spliceosome | ||
| InterPro domain | [1-85] IPR016487 | 4.3e-54 | Small nuclear ribonucleoprotein SmF | |
| [11-76] IPR006649 | 5.1e-22 | Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type | ||
| [8-87] IPR010920 | 3.2e-20 | Like-Sm ribonucleoprotein (LSM)-related domain | ||
| [12-74] IPR001163 | 9.6e-18 | Like-Sm ribonucleoprotein (LSM) domain | ||
| Orthology group | MCL15200 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS214810-TA
ATGGCGGCGTCAATGCCTATAAATCCTAAGCCCTTTTTAAATAGCCTAACAGGAAAGGCTGTATTAGTCAAATTAAAATGGGGACATGAATATAAAGGACTTTTAGTGTCTGCCGACGGTTATATGAATTTGCAGTTAGCAAATACAGAAGAGATTGTCGATGGCTCTTGCACAGGTAATTTGGGAGAAGTTTTAATTAGGTGTAATAATGTGCTGTATGTAAGAGGTGCCGAGGAAGAAGATGAGGAAGGAGAAATGAAAGAATAA
>DPOGS214810-PA
MAASMPINPKPFLNSLTGKAVLVKLKWGHEYKGLLVSADGYMNLQLANTEEIVDGSCTGNLGEVLIRCNNVLYVRGAEEEDEEGEMKE-