Monarch geneset OGS2.0

DPOGS214916
TranscriptDPOGS214916-TA1782 bp
ProteinDPOGS214916-PA593 aa
Genomic positionDPSCF300153 + 184148-189355
RNAseq coverage161x (Rank: top 52%)
Annotation
HeliconiusHMEL0111220.065.85% 
BombyxBGIBMGA014005-TA2e-9848.71% 
DrosophilaNtR-PA4e-2520.83% 
EBI UniRef50UniRef50_D6WUA15e-3629.97%Cys-loop ligand-gated ion channel subunit-like protein n=3 Tax=Tribolium castaneum RepID=D6WUA1_TRICA
NCBI RefSeqXP_971701.13e-4025.62%PREDICTED: similar to NtR CG6698-PA [Tribolium castaneum]
NCBI nr blastpgi|910865175e-3925.62%PREDICTED: similar to NtR CG6698-PA [Tribolium castaneum]
NCBI nr blastxgi|910865173e-3926.13%PREDICTED: similar to NtR CG6698-PA [Tribolium castaneum]
Group
Gene OntologyGO:00160204.4e-20membrane
GO:00068104.4e-20transport
GO:00052304.4e-20extracellular ligand-gated ion channel activity
KEGG pathwayxtr:7797089e-07 
 K05196 (GLRB)maps-> Neuroactive ligand-receptor interaction
InterPro domain[200-410] IPR0062024.4e-20Neurotransmitter-gated ion-channel ligand-binding
[89-167] IPR0220411.4e-13Farnesoic acid 0-methyl transferase
Orthology groupMCL18252 Insect specific
Genotypes for resequenced monarchs and outgroup Danaus species

Nucleotide sequence:

>DPOGS214916-TA
ATGTGGTTGTTAATTTACTTTATTGGGATTTTGGGTTCCGCTGTCGGAAACTTCACATTCACATATGATATGGCGATGCAGTGCAAGGAGCACTTATGTCAACACGGCTACAACTATGAGACATACTACCTGGTTGAATCAGATCAAAGGAAGATTGTAAGATCGGATCCCAGTATAACCTTCGAAATGCACATCGCTATACTAGCAGCTAGCAATGGCCATATACTTCTATCAACTGTTTCACAACCAGACGCAGCCGATCCATTTGTTGGAGGTGGAGGTAATAAATTCACGGAGCTGAGAGGAAATTTGAAAAGGAATGCAAAAGCGTCTGCGAAGACTGTTGGCATTTTATCCACAATTGAGTTCAGGGCGTTTTATATTAAAATAACTGAAGATGGTCTCATTGAATTTGGTCGCGAAGGTGATATATTACCTATCTTAAGCTATCAGGACATGGATCCCATAAACATACATTATTTTAGTTTCGCAGCCTGGAACGGCGTGGAAGCGAAATTCCTCTATGATTGTCCCATACCCTTGAAGAATGCTACAGAAGTTCCGTCATCTGATTCTGTAATGGTAGAACCGAAAATGTCAAATTCCGATATCCTTAAAAGATCACTGCTTTTAAATAGGGATCCAAATATAGCACCCAGATCTAAAGTTACTGTTCAGTTGGGAGTAAAAATTACAAGTATAACGTATGATCCCTTTGAAACCAAATTGCGAACGGGTTTATCAGTGGTTAGGAAATGGACCGACGATAGCATGGCGTGGAATCCTCTAAAATTTAATGGAACAAGCCGCCTAACGTTCCGCCAAGGACAAATTTGGAGCCCCAGTCTATCTATTTACAATTCCGACACTATTGGATTTTTGGATGCCAAAAACTCCGAACCGATAACCATGTTTGAAAGTGGTGAAACGATATTGCATATGCAGACTACCATACAAACTTGGTGTCTTGATTATTCTGACATGTTGACAAAATGGCCCCACGATGAATACGATTGCGTCATTGTGATTGAACCTTGGGAAAATCATGAGGATATAACATTTAAGAAACTAGACCCTGAAGACATGAAAGCTTTTGCAGATATCGATGACGTGATACAAAATTCTTGGGATATAACAACGGAACAATACATACTGAATTCAACATCATGGAATAGCAATTCAAGTGAAAGTGATAGATTCGTTATAGAAGTAGTTTTAAAAAGACGAGCAACTGCTTTCAATATTGTTTTCTATACGCCTTTATTGGTTCTCATGACATTTATTCTTCTATCGTTCTGGACTGAGCCGTTGAATTTAAGACGAATCTGGTTCTACGCCGGTTGCTCTGTTGTAATATGTTCAGGACTGTGTTACATTGACTTTTTAGTACCCTGCCACAGTATTCCTTCAATATTGGTTCTCTACACAGTGGTTTTGGGTGGAGTGCTTCTTGCTTTGTTAATCCATGCGGCGTTAATGACGTCACTGACAAAGCGTCTGTGCAAGACGATTACCATTCAAAATATTTTAACAGCCCAGTGGTTTAGAACTCTGTTTTTCCTTCCACCGTTTAAGACTAGCCATATATATGAGACTATAAACAATGACTATGGAGAAAGTAATGAAGATGTAATGGAAACTTCTGGAATTAGAAATATAGAAGCAATGCAGAGTGATAATAAAGAGGACAACGAATCTGTAGAATTAGCAGAAGCAGTCGATAAAGTTCTGTTTCTTATTTACAGCATGACTTTTGCTGTTATGCTTGCTTTACATTTTTAA

Protein sequence:

>DPOGS214916-PA
MWLLIYFIGILGSAVGNFTFTYDMAMQCKEHLCQHGYNYETYYLVESDQRKIVRSDPSITFEMHIAILAASNGHILLSTVSQPDAADPFVGGGGNKFTELRGNLKRNAKASAKTVGILSTIEFRAFYIKITEDGLIEFGREGDILPILSYQDMDPINIHYFSFAAWNGVEAKFLYDCPIPLKNATEVPSSDSVMVEPKMSNSDILKRSLLLNRDPNIAPRSKVTVQLGVKITSITYDPFETKLRTGLSVVRKWTDDSMAWNPLKFNGTSRLTFRQGQIWSPSLSIYNSDTIGFLDAKNSEPITMFESGETILHMQTTIQTWCLDYSDMLTKWPHDEYDCVIVIEPWENHEDITFKKLDPEDMKAFADIDDVIQNSWDITTEQYILNSTSWNSNSSESDRFVIEVVLKRRATAFNIVFYTPLLVLMTFILLSFWTEPLNLRRIWFYAGCSVVICSGLCYIDFLVPCHSIPSILVLYTVVLGGVLLALLIHAALMTSLTKRLCKTITIQNILTAQWFRTLFFLPPFKTSHIYETINNDYGESNEDVMETSGIRNIEAMQSDNKEDNESVELAEAVDKVLFLIYSMTFAVMLALHF-