| DPOGS214946 | ||
|---|---|---|
| Transcript | DPOGS214946-TA | 522 bp |
| Protein | DPOGS214946-PA | 173 aa |
| Genomic position | DPSCF300280 - 65016-66388 | |
| RNAseq coverage | 422x (Rank: top 29%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL015584 | 4e-77 | 83.24% | |
| Bombyx | % | |||
| Drosophila | Rpb7-PA | 2e-88 | 88.44% | |
| EBI UniRef50 | UniRef50_Q9VFB5 | 2e-86 | 88.44% | IP02321p n=17 Tax=Bilateria RepID=Q9VFB5_DROME |
| NCBI RefSeq | XP_002423690.1 | 1e-89 | 89.82% | mixed-lineage leukemia protein, mll, putative [Pediculus humanus corporis] |
| NCBI nr blastp | gi|383865506 | 2e-89 | 92.98% | PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Megachile rotundata] |
| NCBI nr blastx | gi|383865506 | 5e-90 | 92.98% | PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Megachile rotundata] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0003899 | 5.7e-28 | DNA-directed RNA polymerase activity | |
| GO:0006351 | 5.7e-28 | transcription, DNA-dependent | ||
| GO:0003723 | 8e-14 | RNA binding | ||
| KEGG pathway | nvi:100119037 | 4e-89 | ||
| K03015 (RPB7) | maps-> | Huntington's disease | ||
| Purine metabolism | ||||
| Pyrimidine metabolism | ||||
| RNA polymerase | ||||
| InterPro domain | [83-170] IPR012340 | 3.2e-35 | Nucleic acid-binding, OB-fold | |
| [1-82] IPR005576 | 5.7e-28 | RNA polymerase Rpb7, N-terminal | ||
| [79-171] IPR016027 | 2.3e-22 | Nucleic acid-binding, OB-fold-like | ||
| [78-157] IPR003029 | 8e-14 | Ribosomal protein S1, RNA-binding domain | ||
| Orthology group | MCL14582 | Multiple-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS214946-TA
ATGTTCTACCACATATCGTTGGAGCATGAAATACTGCTGCATCCAAGATATTTTGGACCGCAATTATTAGATACTGTTAAACAGAAGTTGTATACAGAGGTGGAAGGAACTTGCACTGGCAAATATGGTTTTGTTATAGCAGTGACCACAATAGACAGCATTGGTGCAGGTCTCATCCAACCAGGACAAGGATTCGTTGTGTATCCAGTTAAATATAAAGCCATAGTTTTCAGACCATTTAAAGGAGAGGTTCTTGACGCTATAGTCACACAAGTGAATAAGGTTGGAATGTTTGCTCAAATCGGTCCGTTAAGTTGTTTTATATCACATCATTCCATACCCACTGATATGGAATTCTGTCCCAATGTAAATCCCCCGTGCTATAAAAGTAAACAGGAAGATAATGTCATACAGGAAGAGGATGTCATTAGATTAAAGATTGTTGGCACCAGAGTTGATGCCACGGGCATTTTTGCCATCGGAACACTAATGGACGACTACTTAGGATTAGTAACACAATGA
>DPOGS214946-PA
MFYHISLEHEILLHPRYFGPQLLDTVKQKLYTEVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYKAIVFRPFKGEVLDAIVTQVNKVGMFAQIGPLSCFISHHSIPTDMEFCPNVNPPCYKSKQEDNVIQEEDVIRLKIVGTRVDATGIFAIGTLMDDYLGLVTQ-