| DPOGS215324 | ||
|---|---|---|
| Transcript | DPOGS215324-TA | 549 bp |
| Protein | DPOGS215324-PA | 182 aa |
| Genomic position | DPSCF300120 + 201622-203035 | |
| RNAseq coverage | 117x (Rank: top 58%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL010024 | 2e-93 | 90.29% | |
| Bombyx | BGIBMGA007962-TA | 3e-95 | 90.11% | |
| Drosophila | CG4866-PA | 4e-72 | 69.06% | |
| EBI UniRef50 | UniRef50_B0XDY0 | 2e-76 | 75.14% | U3 small nucleolar ribonucleoprotein protein IMP3 n=5 Tax=Coelomata RepID=B0XDY0_CULQU |
| NCBI RefSeq | XP_967615.2 | 8e-82 | 80.45% | PREDICTED: similar to U3 small nucleolar ribonucleoprotein protein IMP3 [Tribolium castaneum] |
| NCBI nr blastp | gi|189241511 | 1e-80 | 80.45% | PREDICTED: similar to U3 small nucleolar ribonucleoprotein protein IMP3 [Tribolium castaneum] |
| NCBI nr blastx | gi|189241511 | 3e-78 | 80.45% | PREDICTED: similar to U3 small nucleolar ribonucleoprotein protein IMP3 [Tribolium castaneum] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0003723 | 1.7e-10 | RNA binding | |
| GO:0005622 | 4.6e-06 | intracellular | ||
| GO:0019843 | 4.6e-06 | rRNA binding | ||
| KEGG pathway | cma:Cmaq_1103 | 2e-11 | ||
| K02986 (RP-S4, rpsD) | maps-> | Ribosome | ||
| InterPro domain | [1-182] IPR022801 | 2.3e-110 | Ribosomal protein S4/S9 | |
| [108-151] IPR002942 | 1.7e-10 | RNA-binding S4 | ||
| [5-101] IPR001912 | 4.6e-06 | Ribosomal protein S4/S9, N-terminal | ||
| Orthology group | MCL13201 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS215324-TA
ATGGTACGAAAATTAAAATTTCATGAGCAAAAATTGCTAAAAAAAGTAGACTTCATATCATGGAAAGTCGACAACAATTTAAGCGAGGTTAAGGTTATGAAAAAATTTCACATTCAGAAGAGAGAAGACTATACAAAGTACAACAAGTTATCCAGAGAAATAAGGGAACTAGCTAACAAAATTAAAGACTTAGATGCTAACACAGAATTTAGAACCGAAGCAAGTGCACAGCTTTTAGAAAAATTATACCAAATGGGACTCATACCAACACGTTGGGATCTGGCTCTCGCTAGTAATGTTCCAGCCAGTGCCTTTTGTAGACGAAGATTACCTGTGGTTATGGTGAGAAACAAAATGTCAGAGAATCTCAAAGAAGCTACAAAGTTTATAGAGCAGGGTCATGTGCGTGTTGGTCCGGAGGTTGTTAAAGACCCAGCATTCCTTGTCACAAGATCTCTCGAGGACTTTGTCACGTGGGTCGATGGTTCCGCCATCAGGAAGCATGTGATGGAGTATAATGACATGAGGGATGACTTTGACATGTTGTAA
>DPOGS215324-PA
MVRKLKFHEQKLLKKVDFISWKVDNNLSEVKVMKKFHIQKREDYTKYNKLSREIRELANKIKDLDANTEFRTEASAQLLEKLYQMGLIPTRWDLALASNVPASAFCRRRLPVVMVRNKMSENLKEATKFIEQGHVRVGPEVVKDPAFLVTRSLEDFVTWVDGSAIRKHVMEYNDMRDDFDML-