DPOGS215412 | ||
---|---|---|
Transcript | DPOGS215412-TA | 573 bp |
Protein | DPOGS215412-PA | 190 aa |
Genomic position | DPSCF300088 + 636740-638169 | |
RNAseq coverage | 2627x (Rank: top 5%) |
Annotation | ||||
---|---|---|---|---|
Heliconius | HMEL017432 | 7e-98 | 94.74% |   |
Bombyx | BGIBMGA012373-TA | 2e-89 | 91.16% |   |
Drosophila | RpL24-like-PA | 2e-65 | 67.25% |   |
EBI UniRef50 | UniRef50_D6WK46 | 1e-64 | 79.01% | Putative uncharacterized protein n=2 Tax=Metazoa RepID=D6WK46_TRICA |
NCBI RefSeq | NP_001093270.1 | 2e-95 | 91.67% | ribosomal protein L24 [Bombyx mori] |
NCBI nr blastp | gi|268306424 | 9e-96 | 93.23% | ribosomal biogenesis protein RLP24 [Manduca sexta] |
NCBI nr blastx | gi|268306424 | 3e-101 | 93.23% | ribosomal biogenesis protein RLP24 [Manduca sexta] |
Group | ||||
---|---|---|---|---|
Gene Ontology | GO:0005840 | 3.7e-90 | ribosome | |
GO:0006412 | 3.7e-90 | translation | ||
GO:0003735 | 3.7e-90 | structural constituent of ribosome | ||
KEGG pathway | tca:658799 | 6e-65 |   | |
  | K02896 (RP-L24e, RPL24) | maps-> | Ribosome | |
InterPro domain | [1-172] IPR000988 | 3.7e-90 | Ribosomal protein L24e | |
[1-64] IPR023441 | 1.2e-32 | Ribosomal protein L24e domain | ||
[6-44] IPR011017 | 1.2e-09 | TRASH | ||
Orthology group | MCL13015 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
---|
>DPOGS215412-TA
ATGCGTATTGAAACTTGTTATTTCTGTTCATCCAGGATATATCCTGGTCATGGTATTCAATTCGTGAGAAACGACTGCAAGATTTTCAGATTTTGTCGATCAAAGTGCCATGCCGCGTTTAAAAAGAAGAAGAATCCACGTAAGACCAAATGGACCAAAGCTTACCGTAAAACTGCTGGTAAAGAACTGGCGATCGACCCGTCATTCGAGTTCGAAAAACGCCGCAATTCCCCATTGAAATACAACAGGGAATTATGGGCAAAAACAATTGAAGCTATGAAGAAGGTCGAAGAAATTAGACAAAAGAGATCAAATAACTATATCATGCAGCGACTAAGGAAAGGCCGTGAAGTCGAGTGGCAAAGAGATGTTAGAGAAGTACAGAGAGATATATCACTTATCAGGTCCCCCGCAGCTGGGCTCAAACAGAGACAGGCACAGGAAGAGATGGAAATTGAACCTGAGACCATTGAAGTGGTTGATGCTAAGGGTCGGAAACAAGTCATTGAAGCACCCGTTATGGTGCCGGCCACTGGAGATATGATCGAAGACGGAGGGGATGTTGAATTATAG
>DPOGS215412-PA
MRIETCYFCSSRIYPGHGIQFVRNDCKIFRFCRSKCHAAFKKKKNPRKTKWTKAYRKTAGKELAIDPSFEFEKRRNSPLKYNRELWAKTIEAMKKVEEIRQKRSNNYIMQRLRKGREVEWQRDVREVQRDISLIRSPAAGLKQRQAQEEMEIEPETIEVVDAKGRKQVIEAPVMVPATGDMIEDGGDVEL-