DPOGS215439 | ||
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Transcript | DPOGS215439-TA | 546 bp |
Protein | DPOGS215439-PA | 181 aa |
Genomic position | DPSCF300298 - 92059-92604 | |
RNAseq coverage | 4494x (Rank: top 3%) |
Annotation | ||||
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Heliconius | HMEL015842 | 2e-88 | 82.87% |   |
Bombyx | BGIBMGA004541-TA | 1e-85 | 80.11% |   |
Drosophila | l(2)efl-PA | 1e-42 | 51.98% |   |
EBI UniRef50 | UniRef50_Q5MGN8 | 7e-79 | 77.01% | Heat shock protein 3 n=7 Tax=Ditrysia RepID=Q5MGN8_LONON |
NCBI RefSeq | NP_001037038.1 | 3e-84 | 80.11% | heat shock protein 20.4 [Bombyx mori] |
NCBI nr blastp | gi|112983152 | 4e-83 | 80.11% | heat shock protein 20.4 [Bombyx mori] |
NCBI nr blastx | gi|112983152 | 8e-82 | 81.01% | heat shock protein 20.4 [Bombyx mori] |
Group | ||||
---|---|---|---|---|
KEGG pathway | dme:Dmel_CG4533 | 7e-41 |   | |
  | K09542 (CRYAB) | maps-> | Protein processing in endoplasmic reticulum | |
InterPro domain | [64-160] IPR002068 | 3.2e-28 | Heat shock protein Hsp20 | |
[15-27] IPR001436 | 5.3e-27 | Alpha crystallin/Heat shock protein | ||
[50-160] IPR008978 | 1.5e-17 | HSP20-like chaperone | ||
Orthology group | MCL25033 |   | Lepidoptera specific |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS215439-TA
ATGTCTCTAATACCATATCTGTTCGACGATTTTCCATTCGGACGTCCTCGTCGATTATTGGATCAGCATTTTGGTTTGGGACTGACTCCAGATGATCTATTGACCGTTGCCGCTGGACCTCTGGCTACTCGCGAATACTACCGACCATGGCGGCATCTTGCGGCAGCAGCACGCGATCTGGGTTCTAGTATTAAATCCGATCCAAATAACTTCCAAATCAGCCTCGACGTCCAACATTTCTCACCTGATGAAATCAGTGTAAAAACCGCCGATGGATTTGTCGTCATTGAAGGTAAACATGAAGAGAAACAGGATCAACATGGCTACGTTTCCCGCCATTTTGTAAGAAGATACGCCCTTCCCGAAGGTTCGTTGCCTGAAACTGTGGAATCCAAGCTATCTTCTGATGGAGTATTGACTATTACCGCTCCAAGGAAAGTTCCAGACTCTGTTAAGGGAGAGCGTAAAGTTCCTATAACCCAAACCGGGCCCGTCAGGAAGGATATCAAAGATCAAAGCGAAGGAACAAATGATAAGGCCCAGTGA
>DPOGS215439-PA
MSLIPYLFDDFPFGRPRRLLDQHFGLGLTPDDLLTVAAGPLATREYYRPWRHLAAAARDLGSSIKSDPNNFQISLDVQHFSPDEISVKTADGFVVIEGKHEEKQDQHGYVSRHFVRRYALPEGSLPETVESKLSSDGVLTITAPRKVPDSVKGERKVPITQTGPVRKDIKDQSEGTNDKAQ-