| DPOGS215448 | ||
|---|---|---|
| Transcript | DPOGS215448-TA | 168 bp |
| Protein | DPOGS215448-PA | 55 aa |
| Genomic position | DPSCF300298 + 266362-268074 | |
| RNAseq coverage | 540x (Rank: top 23%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL016316 | 2e-27 | 100.00% | |
| Bombyx | BGIBMGA005739-TA | 2e-26 | 96.36% | |
| Drosophila | Rpb10-PA | 8e-27 | 96.36% | |
| EBI UniRef50 | UniRef50_UPI000240BA41 | 3e-27 | 94.55% | UPI000240BA41 related cluster n=1 Tax=unknown RepID=UPI000240BA41 |
| NCBI RefSeq | XP_001847684.1 | 9e-26 | 100.00% | DNA-directed RNA polymerase II 7.6 kDa polypeptide [Culex quinquefasciatus] |
| NCBI nr blastp | gi|363734302 | 1e-26 | 94.55% | PREDICTED: uncharacterized protein LOC770704 [Gallus gallus] |
| NCBI nr blastx | gi|219881542 | 1e-25 | 100.00% | RNA polymerase II subunit 10 [Tribolium castaneum] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0003899 | 3.7e-29 | DNA-directed RNA polymerase activity | |
| GO:0003677 | 3.7e-29 | DNA binding | ||
| GO:0006355 | 3.7e-29 | regulation of transcription, DNA-dependent | ||
| GO:0006351 | 3.7e-29 | transcription, DNA-dependent | ||
| KEGG pathway | isc:IscW_ISCW021810 | 3e-25 | ||
| K03007 (RPB10) | maps-> | Huntington's disease | ||
| Purine metabolism | ||||
| Pyrimidine metabolism | ||||
| RNA polymerase | ||||
| InterPro domain | [1-55] IPR000268 | 3.7e-29 | RNA polymerase, subunit N/RPB10 | |
| [1-55] IPR012287 | 3.7e-29 | Homeodomain-related | ||
| [1-55] IPR023580 | 5.7e-24 | RNA polymerase subunit RPB10 | ||
| Orthology group | MCL15014 | Multiple-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS215448-TA
ATGATAATCCCAGTGCGCTGTTTCACCTGTGGCAAAGTTATAGGAAACAAATGGGAGGCATACCTTGGCTTATTGCAAGCAGAATATACTGAAGGTGATGCTCTTGACGCCCTCGGTTTGAAAAGGTATTGTTGCCGGCGAATGCTACTTGGTCACGTGGATTTGTAA
>DPOGS215448-PA
MIIPVRCFTCGKVIGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLGHVDL-