DPOGS215721 | ||
---|---|---|
Transcript | DPOGS215721-TA | 411 bp |
Protein | DPOGS215721-PA | 136 aa |
Genomic position | DPSCF300041 + 262408-262892 | |
RNAseq coverage | 155x (Rank: top 53%) |
Annotation | ||||
---|---|---|---|---|
Heliconius | HMEL009646 | 9e-54 | 93.27% |   |
Bombyx | BGIBMGA005813-TA | 1e-51 | 90.29% |   |
Drosophila | Chrac-16-PA | 5e-17 | 46.94% |   |
EBI UniRef50 | UniRef50_F4WHB1 | 2e-30 | 70.21% | Chromatin accessibility complex protein 1 n=7 Tax=Endopterygota RepID=F4WHB1_ACREC |
NCBI RefSeq | XP_001602177.1 | 7e-34 | 71.43% | PREDICTED: similar to histone-fold protein CHRAC subunit, putative [Nasonia vitripennis] |
NCBI nr blastp | gi|156541654 | 2e-32 | 71.43% | PREDICTED: chromatin accessibility complex protein 1-like [Nasonia vitripennis] |
NCBI nr blastx | gi|156541654 | 2e-34 | 58.91% | PREDICTED: chromatin accessibility complex protein 1-like [Nasonia vitripennis] |
Group | ||||
---|---|---|---|---|
Gene Ontology | GO:0003677 | 1.3e-17 | DNA binding | |
GO:0043565 | 6.6e-09 | sequence-specific DNA binding | ||
GO:0005622 | 6.6e-09 | intracellular | ||
KEGG pathway |   | |||
InterPro domain | [12-86] IPR009072 | 1.3e-17 | Histone-fold | |
[11-70] IPR003958 | 6.6e-09 | Transcription factor CBF/NF-Y/archaeal histone | ||
Orthology group | MCL13581 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
---|
>DPOGS215721-TA
ATGGCGACACCCAAAGCGGAAAAAGATTTGCATTTGCCTCTGTCCAGAGTAAAAACTATTATGAAAAGTTCTCCCGAAGTGGATGCGGTTGGACCGGAACCACTTTACTTAGTCACAAAAGTAACAGAATTATTTGTAACAGATTTAGCAAAGAGAGCATATAAAAACAGTGAAAAAAATTTCCTGGAGTACAAACATATAGCCGAAGTAGTCCAACAAGATGATACTCTAGATTTTTTGAGAGAAATCATGCCTCGAAAGATCACAGTGCGTCAGTTTAAAGAAATGATGGCCAAAAAAGCTGCAAAAGCAAATGACTCAGATGAGACGAGTGAAGAATCTAGTGAGGAAGAGAGTAGCGATGAGAGTTCTAGTGGTAACAGCAATAGCAATCAGGATAACAAAACCTAA
>DPOGS215721-PA
MATPKAEKDLHLPLSRVKTIMKSSPEVDAVGPEPLYLVTKVTELFVTDLAKRAYKNSEKNFLEYKHIAEVVQQDDTLDFLREIMPRKITVRQFKEMMAKKAAKANDSDETSEESSEEESSDESSSGNSNSNQDNKT-