Monarch geneset OGS2.0

DPOGS215853
TranscriptDPOGS215853-TA4527 bp
ProteinDPOGS215853-PA1508 aa
Genomic positionDPSCF300029 - 1239971-1263728
RNAseq coverage17x (Rank: top 81%)
Annotation
HeliconiusHMEL0118110.083.13% 
BombyxBGIBMGA000401-TA0.071.30% 
DrosophilaNmdar1-PA6e-4432.20% 
EBI UniRef50UniRef50_D6X1H40.058.96%Putative uncharacterized protein n=2 Tax=Tribolium castaneum RepID=D6X1H4_TRICA
NCBI RefSeqXP_969367.10.055.16%PREDICTED: similar to AGAP005527-PA [Tribolium castaneum]
NCBI nr blastpgi|2700130250.058.96%hypothetical protein TcasGA2_TC010967 [Tribolium castaneum]
NCBI nr blastxgi|2700130250.051.82%hypothetical protein TcasGA2_TC010967 [Tribolium castaneum]
Group
Gene OntologyGO:00160207.1e-27membrane
GO:00052347.1e-27extracellular-glutamate-gated ion channel activity
GO:00049707.1e-27ionotropic glutamate receptor activity
GO:00068102.5e-23transport
GO:00302882.5e-23outer membrane-bounded periplasmic space
GO:00052152.5e-23transporter activity
KEGG pathwayecb:1000629541e-82 
 K05213 (GRIN3A)maps-> Neuroactive ligand-receptor interaction
InterPro domain[738-1146] IPR0013207.1e-27Ionotropic glutamate receptor
[851-1145] IPR0016382.5e-23Extracellular solute-binding protein, family 3
[754-790] IPR0195943.1e-10Glutamate receptor, L-glutamate/glycine-binding
[100-295] IPR0018282.9e-06Extracellular ligand-binding receptor
Orthology groupMCL14600 Patchy
Genotypes for resequenced monarchs and outgroup Danaus species

Nucleotide sequence:

>DPOGS215853-TA
ATGCGCGCGCGCACGCTGCTGCTCGCGCTGGCTGTGGCGCTGGCGGCAACAGCGCGAGAGTTGCGTGTACTACAGGACGCACGGACCTCGTTCTATCTGGCGATCGCCGCACCGTCTTCAGCCTCCGACTTTGTGCGCACCTTCAATCGTACTCTCAGCGATCTATCCCAAACCTATCTCGCCGGGGATTATCCCCTCTATTTACGCAATATCACGCTGTTACCGCTGTACATCGAGCTGCCAGAAGATGAAAGGTTCAGTGCGCGGGTATTGGAAGAGACGTGTGCAGCACTGGAGGGGCGGAGGGTTGCAGCGCTTCTTGTTTGTGGTGGAGGCTCTGCTGCTGCTGCGCTGGTTTCAACAGCCTCCCGCGCAGGTGTTCCAGTTATCCGCGCATCACCATCTCACTTGCGGTTCGCCTATACCATCGCTAATATTTTTTTTTTGGTTGCTTCACAGGAACTGCTGCCTTTGGAGGTTCGACTGGAGATAACAGCAAGAGAAACATTACATGCACTCAGAGCCACTCTACTGCACACCCATTGGCATACCTTTACTTTGCTTGCTGAAGAAAACATATATTTAACGCTATCGCTAAGGAAGGATCTCTCTTCAATCCTTACAACTCAACCGCTTAATCCTAAATGGCTCTCGCTTCCTTCGAATTATACACGCCGTGCCATCTTTAGGCGACTTGCCGAAGTCTCGAGACTGACACGGGGTGTGGTTGTTCTAATTTGCGATATTAATTATGCGAAGCTTATTATGGACGAAGCCAAACGCTTAAATATGCTTGATGGCCATTTTTTCTGGTTATGGATCGACGCTTCTAATGAAATTGATGTTTTCCATAATATCGGAAATCGTACTAAATATGCAGAGGAAAATTTCAAGGAGAGCTTGAAAGACAAAGACGAAGCATTTACATTTGATGATTTTGAGCGTATCAAACGAGATCACGCAGACAATAATTCATTAGAAGCAAATAGTCCTAAAATTACGAGAAAAAATAATAGATTTTCAAATAAAAGTAGTATTATGGGAAGTAGACATGTAAGAAATATTTCAAAGAATTCAATTTATCGTCGTGTTAGTAGAAATACAAATAAAATTGAAACGCACATGAATAGTAAATTATTATATACAAATTTTAGTCATTCGTATAATGGTAGTCGCAATATTAGTGAAAGTGTAAGGACTTATAATATAAAGAAAAAAGGCGTTGAAACTTCTAAAATTGAAAAGAACTCAATTGAGAGGGAAAATTTGTCCTTGCTCGATATAAATAAGGGTAAACAGACTAGTTCTAATGAATTGAATAGTGAATCTTTTAACAAATATGTAAATAGTATAAATATAAACAAAGTTTATAATAAAAATGAAGTATTAGAAGAGAATACTGTAAGTAGTATTGATAGTCAAGAACTAAGAGATAGAATATTATTTTCAAGTGATATTAGTGATTTCATTATGAATCCCACGGTGCAAACTCCTACGAGTAATATAAGAGGTGCAATCGAGAAACGAAATAATCGATTTGCGATGGACCACGAGGAGCCAATTAGTAGAGACGAAAGTGATATTAAAAAAGTATTTAATAGTCTCCCAGTTGGGTTACTAGCATTACATCCGCAGTCTATGAGAATAGATAGCTCCTTTGCAAAGGCTGCTGTCAGAATGATGGTTGGAGCACTCAGGCGTGTACTTGGCGCATGCGACGCGTGGTCTGCTCAAGCACAATTTTTTAGCGACGCAGCAGCATCTTGTTGGGATGAACCCAGTGATGCTGCATCAGACTTTTCCATGGAGTTTGTGAGAGAAATAAGAATCTCTGCAACTGCAGCATTAGCAGGCGGATTTGAACGCCCAGAGCCGTCTTTATTAGCTGAGTTCGCTTTTTTAAATTTAGTATCAAACCCCAATGGTGGTAATAAGTGGAGACAAGTTGGCCATATCCTTGGTCGCAGTGTAAGACTTCATACAATAGTGTGGCCAGGAGGTCGTCTAGTTGCTCATGGCCAATCATCAGGTGCTCGCACTATTTTCCGCATAGTTACAGCTCTAGCTCCGCCCTTTGTTATGGAAGGTGAATTAGATGAAGATGGTCAATGTCTACGTGGACTTCCGTGTCATCGTCCACAAACGTCTGATCGAGATAATCTTACACTTGTTTTTAATGAATTAGAAAGAGACAGCGATCAAACAACAACAGATTTTTTTTTCCCAACACCTAAACCGTCAACTATTTGGAAAATGGCCACTCATTGTTGCTATGGATTTGCAATGGATTTGTTAGAAAATATCGCAGAAGAATTAGAATTTGATTTTCATTTATATATTGTAGATGATGGTCTATATGGATCTCGAAAATTAGTAAAACCATTTCGTAATTTCAATGAAGATAAAAATAATGATAAAAAACACAGATCAAGTGACCAGTCGCAGGCCAAGCATCGAGACGACGACTTTATTGATATAGATAAAAATGAGTATAATAAACAAAATAGCTTGACAGGAGACGGGGATTCCGATGACAATTCTGATATATGGAAATGGAATGGTATTATTGGAGATTTGGTGTCTGGAGCTGCACACATGTCATTTGCTGCCCTTAGCGTGTCGGCTGCTAGGGCAGAAGTAGTTGACTTCAGCCAACCTTATTTTTTTAGCGGAATATCTATTTTAGCAGCACCAAACCAAAGACCAGACATACCACTTTTAGCATTTTTGTTGCCGTTTTCTCCAGAATTGTGGATTGCAATATTCACCTCACTTAATGTTACAGCTATTGCTGTAGCAATATACGAATGGCTTTCTCCATTTGGATTAAATCCGTGGGGTAGGCAAAGATCAAAAAACTTTAGTATTTCAAGTGCACTGTGGGTAATGTGGGGACTTCTTTGTGGACACTTAGTTGCTTTCAAAGCCCCAAAAAGCTGGCCTAATAAATTCCTAATCAATGTTTGGGGTGGCTTTTCTGTGATATTTGTCGCAAGTTACACTGCTAATATAGCAGCTCTGATAGCTGGTTTATTTTTTCATAATGCTGTTGATGACTACCAAGGAAGAGGCAATTGGTTGTCTTTACGAGTCGGCACAGCAAAATCTTCAGTAGCTGAATATTATATTCAACGAAATAATCCACTGTGGGCGCAACAAATGCGTCGTTTTGCCCTTCATAATATAGAGGAAGGAATTGAGCGGCTGAGGAATGGAAGTTTGGACCTTTTGATAGCCGACTCACCTGTTTTAGACTATTATCGCGCCACAGATCATGGCTGTAAGCTTCAACGCGTAGGAGACCATGCTCTCACTAAAGATATTTATGCAATAGGAATGTCAAAAGGATTTCCTCTAAAGGACAGCATATCGGCTGTAATAGCCAAATATTCATCAAACGGTTACATGGACATTTTAACTGAGAAATGGTACGGTGCTCTACCTTGCTTCAAACTAAGTCCTGATTATGGAATACAGCCAAAACCACTCGGCGTTGCGGCTGTTGCGGGTGTATTTATATTACTGGGAGTAGGAATGATTGTAGGATGCCTAATATTGATTTTGGAGCATCTTTTTTACAAATACACGCTTCCTATTTTACGCCATCAACCGAAAGGAACTATTTGGAGGAGTCGAAATATAATGTTTTTCAGTCAGAAACTGTACAGATTTATAAATTGCGTCGAACTTGTATCACCACATCACGCAGCGAGGGAGCTCGTTAATACTATTCGGCAGGGTCATTTCACATCTTTATTCCAAAAAAGTGTAAAAAGGAAGGAACACGAACAGCGTAGAAGAAGAAAAAGCAAGGCACAGTTCTTTGAAATGATCCAAGAAATCAGAAGGGTCCAACAAGGTCGTGATCTTTCATTGGATTCCATTAAAGAAAATGCTGTTGTGGAAACTTCAGAATTGTCGGAAGATGTAACCGAGACAAAATTTCTTTCACCGTCACCCGACGTATCAAGTCATTCACCGCGTCGAAGCAGGTCACCAAGACAATATAGATCTCCAAGAAGCAAAAGAAAAAGGTGCAGTTTAGCGGGTCTTAATGTACGTAGATTTAGCACTGATTCGGTCTTAGGGTCCGATTCTGCTTCAATATATGAAAAAACTAGTATTAATATTGGTCGAAGATTAAGTCGTGACGTTAGTTTCCTAACCAATTCCCCGCCGGATATTAATACAAGACTACGAACACCATCGCCGATGGTTAGGCGACCCGAAGGATCCTCTACAAGATCTTATCAAGACATGTCTGATTCTTCTCCTAATTATTTAGCCATAGACGCTCCAAGTCATCGAGCGAGTGTGGAAATAATGGTTACTCAGGAATCGGAAATTTCATCTGCACCGCCTTATAACCGAGTGTCTCCAATGGGTGCAAGATCTGAATTATCTCGATTGTCTGAAGAAGAACTGATTAGATTATGGCGAAGTTCTGAACGTGAAGTTAGAGAGGCTCTTTTGGCTGCATTACAAGAGAGGAGAGCGAGTCTGGAGCCAAAACAAGAACCAGGATGA

Protein sequence:

>DPOGS215853-PA
MRARTLLLALAVALAATARELRVLQDARTSFYLAIAAPSSASDFVRTFNRTLSDLSQTYLAGDYPLYLRNITLLPLYIELPEDERFSARVLEETCAALEGRRVAALLVCGGGSAAAALVSTASRAGVPVIRASPSHLRFAYTIANIFFLVASQELLPLEVRLEITARETLHALRATLLHTHWHTFTLLAEENIYLTLSLRKDLSSILTTQPLNPKWLSLPSNYTRRAIFRRLAEVSRLTRGVVVLICDINYAKLIMDEAKRLNMLDGHFFWLWIDASNEIDVFHNIGNRTKYAEENFKESLKDKDEAFTFDDFERIKRDHADNNSLEANSPKITRKNNRFSNKSSIMGSRHVRNISKNSIYRRVSRNTNKIETHMNSKLLYTNFSHSYNGSRNISESVRTYNIKKKGVETSKIEKNSIERENLSLLDINKGKQTSSNELNSESFNKYVNSININKVYNKNEVLEENTVSSIDSQELRDRILFSSDISDFIMNPTVQTPTSNIRGAIEKRNNRFAMDHEEPISRDESDIKKVFNSLPVGLLALHPQSMRIDSSFAKAAVRMMVGALRRVLGACDAWSAQAQFFSDAAASCWDEPSDAASDFSMEFVREIRISATAALAGGFERPEPSLLAEFAFLNLVSNPNGGNKWRQVGHILGRSVRLHTIVWPGGRLVAHGQSSGARTIFRIVTALAPPFVMEGELDEDGQCLRGLPCHRPQTSDRDNLTLVFNELERDSDQTTTDFFFPTPKPSTIWKMATHCCYGFAMDLLENIAEELEFDFHLYIVDDGLYGSRKLVKPFRNFNEDKNNDKKHRSSDQSQAKHRDDDFIDIDKNEYNKQNSLTGDGDSDDNSDIWKWNGIIGDLVSGAAHMSFAALSVSAARAEVVDFSQPYFFSGISILAAPNQRPDIPLLAFLLPFSPELWIAIFTSLNVTAIAVAIYEWLSPFGLNPWGRQRSKNFSISSALWVMWGLLCGHLVAFKAPKSWPNKFLINVWGGFSVIFVASYTANIAALIAGLFFHNAVDDYQGRGNWLSLRVGTAKSSVAEYYIQRNNPLWAQQMRRFALHNIEEGIERLRNGSLDLLIADSPVLDYYRATDHGCKLQRVGDHALTKDIYAIGMSKGFPLKDSISAVIAKYSSNGYMDILTEKWYGALPCFKLSPDYGIQPKPLGVAAVAGVFILLGVGMIVGCLILILEHLFYKYTLPILRHQPKGTIWRSRNIMFFSQKLYRFINCVELVSPHHAARELVNTIRQGHFTSLFQKSVKRKEHEQRRRRKSKAQFFEMIQEIRRVQQGRDLSLDSIKENAVVETSELSEDVTETKFLSPSPDVSSHSPRRSRSPRQYRSPRSKRKRCSLAGLNVRRFSTDSVLGSDSASIYEKTSINIGRRLSRDVSFLTNSPPDINTRLRTPSPMVRRPEGSSTRSYQDMSDSSPNYLAIDAPSHRASVEIMVTQESEISSAPPYNRVSPMGARSELSRLSEEELIRLWRSSEREVREALLAALQERRASLEPKQEPG-