MonarchBase - Protein-coding gene

Monarch geneset OGS2.0

DPOGS216029
Transcript	DPOGS216029-TA	327 bp
Protein	DPOGS216029-PA	108 aa
Genomic position	DPSCF300067 - 621200-622295
RNAseq coverage	4966x (Rank: top 3%)

Annotation
*Heliconius*	HMEL008949	5e-58	96.30%
*Bombyx*	BGIBMGA009012-TA	1e-57	95.37%
*Drosophila*	Cyt-c-p-PA	5e-52	85.19%
EBI UniRef50	UniRef50_G7Y2H8	8e-46	76.64%	Cytochrome c n=4 Tax=Opisthokonta RepID=G7Y2H8_CLOSI
NCBI RefSeq	XP_310154.1	5e-51	86.11%	AGAP009537-PA [Anopheles gambiae str. PEST]
NCBI nr blastp	gi\|124076981	1e-54	95.37%	RecName: Full=Cytochrome c
NCBI nr blastx	gi\|124076981	1e-55	95.37%	RecName: Full=Cytochrome c

Group
Gene Ontology	GO:0009055	2.2e-81	electron carrier activity
	GO:0020037	2.2e-81	heme binding
	GO:0005506	2.2e-81	iron ion binding
KEGG pathway	aga:AgaP_AGAP009537	2e-50
	K08738 (CYC)	maps->	Colorectal cancer
			Amyotrophic lateral sclerosis (ALS)
			Viral myocarditis
			Alzheimer's disease
			Apoptosis
			Small cell lung cancer
			Huntington's disease
			Pathways in cancer
			p53 signaling pathway
			Parkinson's disease
InterPro domain	[1-107] IPR002327	2.2e-81	Cytochrome c, class IA/ IB
	[5-107] IPR009056	1.2e-45	Cytochrome c domain
	[8-105] IPR003088	1.1e-11	Cytochrome c, class I
Orthology group	MCL11053		Single-copy universal gene

Genotypes for resequenced monarchs and outgroup Danaus species

Nucleotide sequence:

>DPOGS216029-TA
ATGGGTGTCCCTGCTGGAAATGCGGAAAACGGCAAAAAGATCTTTGTTCAAAGATGTGCTCAATGTCACACCGTTGAGGCTGGCGGCAAGCACAAAGTAGGACCCAACCTACATGGTTTCTTTGGTCGCAAAACTGGTCAAGCTTCCGGGTTTAACTATTCAGAAGCCAACAAAGCTAAAGGTATCACCTGGGGCGATGACACACTCTTTGAGTACTTGGAGAACCCTAAGAAATACATCCCCGGAACAAAGATGGTGTTTGCTGGCCTCAAGAAAGCAAATGAACGTGCGGATCTAATTGCCTACCTTAAAGAAGCTACTAAGTAA

Protein sequence:

>DPOGS216029-PA
MGVPAGNAENGKKIFVQRCAQCHTVEAGGKHKVGPNLHGFFGRKTGQASGFNYSEANKAKGITWGDDTLFEYLENPKKYIPGTKMVFAGLKKANERADLIAYLKEATK-