DPOGS216152 | ||
---|---|---|
Transcript | DPOGS216152-TA | 312 bp |
Protein | DPOGS216152-PA | 103 aa |
Genomic position | DPSCF301801 + 459-913 | |
RNAseq coverage | 17x (Rank: top 81%) |
Annotation | ||||
---|---|---|---|---|
Heliconius | HMEL006167 | 1e-45 | 90.22% |   |
Bombyx | % |   | ||
Drosophila | Mlh1-PA | 5e-30 | 57.61% |   |
EBI UniRef50 | UniRef50_P40692 | 8e-30 | 65.17% | DNA mismatch repair protein Mlh1 n=71 Tax=Euteleostomi RepID=MLH1_HUMAN |
NCBI RefSeq | XP_001176052.1 | 2e-32 | 67.78% | PREDICTED: similar to DNA mismatch repair protein homolog [Strongylocentrotus purpuratus] |
NCBI nr blastp | gi|115615225 | 4e-31 | 67.78% | PREDICTED: similar to DNA mismatch repair protein homolog [Strongylocentrotus purpuratus] |
NCBI nr blastx | gi|115615225 | 8e-30 | 69.32% | PREDICTED: similar to DNA mismatch repair protein homolog [Strongylocentrotus purpuratus] |
Group | ||||
---|---|---|---|---|
Gene Ontology | GO:0005634 | 8.1e-44 | nucleus | |
GO:0005524 | 8.1e-44 | ATP binding | ||
GO:0006298 | 8.1e-44 | mismatch repair | ||
GO:0030983 | 8.1e-44 | mismatched DNA binding | ||
KEGG pathway | spu:588545 | 6e-32 |   | |
  | K08734 (MLH1) | maps-> | Colorectal cancer | |
  |   |   | Pathways in cancer | |
  |   |   | Endometrial cancer | |
  |   |   | Mismatch repair | |
InterPro domain | [1-99] IPR011186 | 8.1e-44 | DNA mismatch repair protein Mlh1 | |
[1-99] IPR002099 | 8.1e-44 | DNA mismatch repair protein | ||
[2-77] IPR013507 | 9.5e-27 | DNA mismatch repair protein, C-terminal | ||
[2-77] IPR014721 | 1.4e-26 | Ribosomal protein S5 domain 2-type fold, subgroup | ||
[1-78] IPR020568 | 2.3e-23 | Ribosomal protein S5 domain 2-type fold | ||
Orthology group |   |
Genotypes for resequenced monarchs and outgroup Danaus species |
---|
>DPOGS216152-TA
ATGCTTCTATATATAAACCATAGATTAGTAGACTCACTGTCCATTCGTAAAGCCGTGGATTCCGTATATGCTACGTACTTACCAAAAAACGCCCACTCCTTTGTCTATCTGAGTATTGAATTAGATCCAAAAAACGTCGATGTGAATGTACATCCAACGAAACATGAAGTACAATTTCTTTACGAGGAACAAATTATAGAAAAGATAAAGAATACCATTGAGAAGAAACTTCTCAGTTGTAATTCATCTAGAGTTATGTATACACAGGTGAGAATAAAAAGAGTATATATATATATATANNNNTTTATATAA
>DPOGS216152-PA
MLLYINHRLVDSLSIRKAVDSVYATYLPKNAHSFVYLSIELDPKNVDVNVHPTKHEVQFLYEEQIIEKIKNTIEKKLLSCNSSRVMYTQVRIKRVYIYIXXFI-