| DPOGS216158 | ||
|---|---|---|
| Transcript | DPOGS216158-TA | 195 bp |
| Protein | DPOGS216158-PA | 64 aa |
| Genomic position | DPSCF300155 - 379102-379368 | |
| RNAseq coverage | 67500x (Rank: top 0%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL016551 | 5e-24 | 79.69% | |
| Bombyx | BGIBMGA014175-TA | 1e-26 | 79.69% | |
| Drosophila | cype-PC | 2e-15 | 54.69% | |
| EBI UniRef50 | UniRef50_Q9VMS1 | 5e-13 | 54.69% | Cyclope n=15 Tax=Diptera RepID=Q9VMS1_DROME |
| NCBI RefSeq | XP_002052424.1 | 4e-14 | 54.69% | GJ17541 [Drosophila virilis] |
| NCBI nr blastp | gi|149689114 | 1e-13 | 55.56% | cytochrome c oxidase [Triatoma infestans] |
| NCBI nr blastx | gi|149689114 | 5e-13 | 55.56% | cytochrome c oxidase [Triatoma infestans] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0004129 | 5.4e-26 | cytochrome-c oxidase activity | |
| KEGG pathway | dme:Dmel_CG14028 | 2e-13 | ||
| K02268 (COX6C) | maps-> | Huntington's disease | ||
| Oxidative phosphorylation | ||||
| Alzheimer's disease | ||||
| Cardiac muscle contraction | ||||
| Parkinson's disease | ||||
| InterPro domain | [1-64] IPR004204 | 5.4e-26 | Cytochrome c oxidase subunit VIc | |
| Orthology group | MCL11526 | Multiple-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS216158-TA
ATGCGTGGTCTCCTCAACTCTGCTATCAAGCGCAACTTGATCCTCTCCCTATCTTTCGCTGCTGTTTGCGGCTTTGCCTTCAAACAGCTTGTTGGCAATGAACGCAAGAGGAAGTATGCCGAGTTCTACAGGACATATGATGCTGAGAAGGAGTTTGAGGAGATGCGTGCGAAGGGACTGTTCCAATCATGCTAA
>DPOGS216158-PA
MRGLLNSAIKRNLILSLSFAAVCGFAFKQLVGNERKRKYAEFYRTYDAEKEFEEMRAKGLFQSC-