| New model in OGS2.0 | DPOGS205257 |
|---|---|
| Genomic Position | scaffold1065:+ 23986-34850 |
| See gene structure | |
| CDS Length | 1503 |
| Paired RNAseq reads | 8 |
| Single RNAseq reads | 25 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA012973 (7e-12) |
| Best Drosophila hit | ND |
| Best Human hit | ND |
| Best NR hit (blastp) | PREDICTED: transposon Ty3-I Gag-Pol polyprotein-like, partial [Xenopus (Silurana) tropicalis] (9e-48) |
| Best NR hit (blastx) | PREDICTED: transposon Ty3-I Gag-Pol polyprotein-like, partial [Xenopus (Silurana) tropicalis] (9e-45) |
| GeneOntology terms | GO:0003677 DNA binding GO:0003723 RNA binding GO:0003964 RNA-directed DNA polymerase activity GO:0006278 RNA-dependent DNA replication |
| InterPro families | IPR000477 Reverse transcriptase |
| Orthology group | MCL15204 |
Nucleotide sequence:
ATGTCAGTTATACCGAGAGCTTCAAAGCCGGAGAAAAGAACAGTGGAATTGTCTTTAAGA
TTTGGAAAATTTCTATTGCTGAGTGAACAAAACGTGTCTGAACAATCCCGAGGGATATCC
GGAGTAGATAACTGGCTACATTCCTACCACTCCCTCCTAACAACTCGGCTTCTGCTACAA
ATAACCTGTTTACCTTTCGGTCTTATACCGGTTCCAAGAACGTTCGCATCGGTAACCAAT
TGGATAGCAGAATTGTTGAGAAATCACGGCATCAGATGCGTAGTATATCTCGACGATTTT
TTGCGTGCGAACCAGTCCAAATCGGCTTTACAGAACGACATAGCAGGGGCGCTAAAGATG
ATGAGGACCCTAGGCTGGATGATAAATTTTCAGAAATCGGTCTTAGCCCCGACACAATGC
CTCGAGTTTCTCGGCATAACGTGGGACACAAAACGTAACACAAAGTCCCTGTCGGGGCAG
AAGTGCTTAACGCTACGCAAGGCACTGTATCTGCTCAAACAGAGCAAATGGTCTCTCCGA
CAATACCAGTCCATTATGGGGAGACTCAAATTTGCGAGTTTTGTAACTCGCAGGGGTCGG
CTTCACTGTCGAACACTGCAGTACTACAGTCGACAGTTGCCGAAAACTCACCCGCACCGC
CGCGTGAGTATTCCCCAACCAGTACAGCCGGAATTGGAATGGTGGCTGGAAGAAATAGGA
GGGTCAATGCCGATTCAAATACCTCAATTGACCAACCTTTTGACTACAAATGCATCCAAC
ACAGGCTGGGGTGCACAGCTCAACGAAATCAGCATATCAAGAACGTGGACGAAACCAGCT
ATTCAACTCGATCAGGATGGCTTGCAAAACTCACAAATACTTCTTCAGACCGACAACCGG
ACCGTTGTATCATACATAAACAAAGAAGGAGGTACTCAGTCTCTGAAGCTTCTGGAACAA
ACTCGGCGGCTTCTATCGGTTCTAGACAAAGTGAACATGCATCTAATAGCACAATATATA
CCGGGCAGATACAATGTAGAAGTCGATGCATTGTCCCGTCAAAAGGCTTGCCCCGAATGG
CACTTGATAACAGAAGCAACCACGAAAATATTTCAAATGTGGGGGTGTCCAGAAATAGAT
TTTTTCGCATCGAAAACGGCCCACGTAGTTCGGACATATGTAACAAAAGACATTCAAGAT
CTAGATGCTTTCTATCACAATGCCTTTTGTCGCTCTTGGGATTACAATCTGGCATGGCTA
TTCCCACCATCCAATTTAATCCCTAGGGTACTTGCTCACTTGAACCAGGCCAAAGGACTC
CATGTTATAATAGCTCCGAAATGGCAAAAGGTGTTTTGCCAATCGGATCTTCAGAACCGA
GCCTTATATCTAATTCCAGATCTGAACCGTGTACTTCTAGACACGCGAACAGGAACACAC
CCACCGGAAGTTCAAAAATTACAACTGGGAGCTTGGCTGATTTCGGGTGGCAGGAAATTT
TAA
Protein sequence:
MSVIPRASKPEKRTVELSLRFGKFLLLSEQNVSEQSRGISGVDNWLHSYHSLLTTRLLLQ
ITCLPFGLIPVPRTFASVTNWIAELLRNHGIRCVVYLDDFLRANQSKSALQNDIAGALKM
MRTLGWMINFQKSVLAPTQCLEFLGITWDTKRNTKSLSGQKCLTLRKALYLLKQSKWSLR
QYQSIMGRLKFASFVTRRGRLHCRTLQYYSRQLPKTHPHRRVSIPQPVQPELEWWLEEIG
GSMPIQIPQLTNLLTTNASNTGWGAQLNEISISRTWTKPAIQLDQDGLQNSQILLQTDNR
TVVSYINKEGGTQSLKLLEQTRRLLSVLDKVNMHLIAQYIPGRYNVEVDALSRQKACPEW
HLITEATTKIFQMWGCPEIDFFASKTAHVVRTYVTKDIQDLDAFYHNAFCRSWDYNLAWL
FPPSNLIPRVLAHLNQAKGLHVIIAPKWQKVFCQSDLQNRALYLIPDLNRVLLDTRTGTH
PPEVQKLQLGAWLISGGRKF