| New model in OGS2.0 | DPOGS200450 |
|---|---|
| Genomic Position | scaffold4328:+ 44-4678 |
| See gene structure | |
| CDS Length | 1158 |
| Paired RNAseq reads | 356 |
| Single RNAseq reads | 822 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA011230 (2e-106) |
| Best Drosophila hit | CG3709 (2e-35) |
| Best Human hit | putative tRNA pseudouridine synthase Pus10 (6e-41) |
| Best NR hit (blastp) | conserved hypothetical protein [Pediculus humanus corporis] (1e-66) |
| Best NR hit (blastx) | conserved hypothetical protein [Pediculus humanus corporis] (1e-54) |
| GeneOntology terms | GO:0016853 isomerase activity GO:0008033 tRNA processing |
| InterPro families | IPR020103 Pseudouridine synthase, catalytic domain |
| Orthology group | MCL15740 |
Nucleotide sequence:
ATGATCATAGTTAATTCTCTCACTCCATTAAAGGAAGCCTGGAAATGGTCGTTTGGTACA
CATTTATCGAGACACATCCATAAAACTCTGGACTCGGGAGCCATTTCTCCGTTGTTGGTC
ACACTGAATATTGACTATGATGATGATATACAGGAATTGGAGATCCTCAAGAAGGTTTCA
CCGCAGCTGTTCGAAGAGAGAAGCAGGCAGAGGAGAAGATTTGCTACAGAATTCACTCGT
AGATCAGTCGAACAGGCGCTAGAGACCGCCACGCTGTCCTCTTTCCGTGCGGCGGGTGAT
GCTCTATCCCGGGTTAGCTCTAATGCACACTGCGTTAGTGTCATATGCACACACGCGCCC
ATTTACGTGTGCGGGAGGTATGTAAAGCTGAGTAGAAACCTTCCCCAATCTCCATGGGTC
TTGGATGGTAAGAGGGTCCTGCCGTCGTCAGTGCAGGAGATAATATTTGGACCCATAGCC
AAATTTTACAATTTCAGCGATGTTGACTGTGAGGGTAGATTGAAATTTATAGCAGCCGGT
AGAGAGGACGTTGATGTGAGGTGCCTGGGTGACGGCAGGCCATTTGCTATTGAGATAACA
GATCCCAAGCGAGAGCTGACATCTGAAGAATTGAATGAAGCCTGTGACATGATATCTACA
AGTGAGGAGGTGGTTGTTAAGAAACTTGTGCCCATCAATAGAGAGGACCTCGCGTTACTG
AAGAAAGGGGAGGAGACTAAGAGCAAGACTTATGAGGCGTTGTGCATCAAACTGACTCAC
TCCAAACATGATGATTGCCCTCCAGACAGTCCGATAACAGTGACGCCCACAGACTTGCAA
CTGATTAACGACTATAAGGAATCGGATGATGTAACGATGACGATATCACAGAAGACGCCT
CTTCGAGTACTACACCGACGACCTCTCCTGGTCAGGAAAAGAGAGATTCTGGAAATGTCC
GCTGTGCCTGTACCCGAACATCCTCAGTTGTTTCGTTTGTTTGTCCGCACGTCCGCGGGG
ACTTACGTCAAGGAGTGGGTGCACGGCGAGTTGGGGCGGAGCACTCCGTCCTTAGGAGAC
GTGATGGGATCGCGAGTAGACCTGCTGGCGCTGGACGTTACAGCTGTACATTTACAATGG
CCGCCAGTCAAAGAATAA
Protein sequence:
MIIVNSLTPLKEAWKWSFGTHLSRHIHKTLDSGAISPLLVTLNIDYDDDIQELEILKKVS
PQLFEERSRQRRRFATEFTRRSVEQALETATLSSFRAAGDALSRVSSNAHCVSVICTHAP
IYVCGRYVKLSRNLPQSPWVLDGKRVLPSSVQEIIFGPIAKFYNFSDVDCEGRLKFIAAG
REDVDVRCLGDGRPFAIEITDPKRELTSEELNEACDMISTSEEVVVKKLVPINREDLALL
KKGEETKSKTYEALCIKLTHSKHDDCPPDSPITVTPTDLQLINDYKESDDVTMTISQKTP
LRVLHRRPLLVRKREILEMSAVPVPEHPQLFRLFVRTSAGTYVKEWVHGELGRSTPSLGD
VMGSRVDLLALDVTAVHLQWPPVKE