New model in OGS2.0 | DPOGS202877  |
---|---|
Genomic Position | scaffold7665:+ 615-4779 |
See gene structure | |
CDS Length | 813 |
Paired RNAseq reads   | 5 |
Single RNAseq reads   | 19 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA000891 (7e-60) |
Best Drosophila hit   | CG8916, isoform B (1e-87) |
Best Human hit | gamma-aminobutyric acid receptor subunit alpha-4 precursor (2e-39) |
Best NR hit (blastp)   | cys-loop ligand-gated ion channel subunit [Tribolium castaneum] (3e-115) |
Best NR hit (blastx)   | cys-loop ligand-gated ion channel subunit [Tribolium castaneum] (7e-99) |
GeneOntology terms    | GO:0004890 GABA-A receptor activity GO:0045211 postsynaptic membrane GO:0005230 extracellular ligand-gated ion channel activity GO:0016021 integral to membrane GO:0006811 ion transport |
InterPro families    | IPR006201 Neurotransmitter-gated ion-channel IPR006202 Neurotransmitter-gated ion-channel ligand-binding IPR006028 Gamma-aminobutyric acid A receptor IPR006029 Neurotransmitter-gated ion-channel transmembrane domain |
Orthology group | MCL16730 |
Nucleotide sequence:
ATGGAACTCCGTAATTTCCCGATGGACCGTCAATCCTGCCCACTCATTCTTGGCAGCTAT
GCCTATTCCAATCAGCAGCTAGTGTATCAATGGCAGAACTCCCAGAGCGTCAACTTTGTT
CCGGGCATGACATTATCCCAATTTGATCTCATCAGCTTCCCATATAGAAATTTTACATTC
ACCAGACGTGAAGGTGACTTTTCTGTCCTCCAAGTATCTTTCAACCTGAAGCGACACACG
GGGTATTTTCTCATTCAAGTGTACGTGCCCTGCATACTCATAGTGGTACTATCATGGGTA
TCCTTCTGGATTCACAGAGAGGCGACATCAGACCGCGTGGGACTCGGCATCACGACCGTT
TTAACTCTGTCAACAATCAGCTTGGACTCACGCACAGATCTTCCGAAGGTGCGTTACGCC
ACTGCACTCGACTGGTTTCTTTTGATGAGCTTCTTCTATTGTATCGCTACACTGCTTGAG
TTTGCTGGTGTACACTATTTTACAAAGGTCGGTTCCGGCGAAATAGTGATTGATGATTCA
GAGTGGGAAGACTTGATCGAGGAGGTCGGTGGTGACGCCTTCGCAGCGAGACAGCTGGCT
GTGAGGAGACGAAGTTCCGCCAGATCTTCAAATAACTTTAGTATGCCCGGCGTATCAGAC
AATGAAGGCGAAATGCAGGACCAGCAATCAGTTCGTCTGACGATGGAGCGCACCACGCAG
ACAGAGGTGCGGGTGCCTCACTGGAGACAACTGCTGTACTGTCTAGCAGGAGACGATCAA
TATAGAAGGCAGCGGCAAAGAGAAGCTGGTTAG
Protein sequence:
MELRNFPMDRQSCPLILGSYAYSNQQLVYQWQNSQSVNFVPGMTLSQFDLISFPYRNFTF
TRREGDFSVLQVSFNLKRHTGYFLIQVYVPCILIVVLSWVSFWIHREATSDRVGLGITTV
LTLSTISLDSRTDLPKVRYATALDWFLLMSFFYCIATLLEFAGVHYFTKVGSGEIVIDDS
EWEDLIEEVGGDAFAARQLAVRRRSSARSSNNFSMPGVSDNEGEMQDQQSVRLTMERTTQ
TEVRVPHWRQLLYCLAGDDQYRRQRQREAG