| New model in OGS2.0 | DPOGS202165 |
|---|---|
| Genomic Position | scaffold1548:- 22-6956 |
| See gene structure | |
| CDS Length | 1827 |
| Paired RNAseq reads | 1429 |
| Single RNAseq reads | 3059 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA003435 (1e-57) |
| Best Drosophila hit | CG1965 (1e-18) |
| Best Human hit | GC-rich sequence DNA-binding factor 1 isoform 1 (1e-17) |
| Best NR hit (blastp) | PREDICTED: similar to gc-rich sequence DNA-binding factor [Tribolium castaneum] (1e-70) |
| Best NR hit (blastx) | GJ23221 [Drosophila virilis] (7e-21) |
| GeneOntology terms | GO:0003677 DNA binding GO:0003700 sequence-specific DNA binding transcription factor activity GO:0045449 regulation of transcription GO:0071013 catalytic step 2 spliceosome GO:0000398 nuclear mRNA splicing, via spliceosome GO:0071011 precatalytic spliceosome |
| InterPro families | IPR012890 GC-rich sequence DNA-binding factor IPR022783 GC-rich sequence DNA-binding factor domain |
| Orthology group | MCL10454 |
Nucleotide sequence:
ATGTCCTTGTTTCGTAAACCGAAGAAGATCCAGAGACGAGTTTTTTGTGCTGACGATGAA
GAAGACGGTGAGCCGGAGGCACCTGTGCCGCCGCCGCCGCCGATTATTAGTAATTCAAGG
AAGGAAAACAAACAAGTAAAAGTAACAACGCTATTGAGTTTCGCCGATGAAGAGGAAGAG
GGCGAAGTATTCAAGGTGAAGAAGTCATCACAGAGCAAGAGATTGAGTAAACGGAGACAG
AAAGAAAAACAACGCACAGATGGTGATAGTAATAAATATGACAATCACATGGTCGAGGAG
AAACCGTCGGAGGAGATAGAAGAACCGAGGAAGAAGGTTACCCTCGAGGGTCTGATCCTG
TCAGGGCGGGAGGCGTTGTCCGCGGACGGGGCGGGGGACATTTCCGAAGACAGCGAGGAA
GATAACAGGGGGTTCCACACGTACCGAGCCGAGAGCGTGCGGGCGGCGCTCGCCGGCGCG
GGGGGAATCCCCGACGCCGCGCTCATACACGCCGCGCGCAAGACCCGACAGCAGGCTCGT
GAGTTGGGTGACTTTGTTCCCATCAAGAATGATGGCGGCTCCAGGATGATGAGAGATGAT
GACGCTGATGACGATGACGATGATGAGGCAGACGAGGGCCGGATACAGGTCAGGGGGTTG
GAACTGCCAAGCGACAGACCCGAACGTGGTACAACAGCCGCCGCGTCTGATGATGAAGCT
CAAAGTGAAGGAGAGGAGTGGGAGGAGCAGCAGATTAAGAAAGCTGTGCCCTCAATAGCT
GATATTACAGGTGATTGTATCCCACTAAATCCGTTCGCTGTTCCTCCGCCCCCGGACACG
CCGCGTCACCTGCGGTCCCTCGCGCGCCCCGGACAGCCTCCGCCAGCTACCGCGCAACAA
CTCGTAGAGGCGCTACGAGACAGGCTGTCAGAGCTTCACGAGAGTCGTGCGAGAACAGCG
CAGCGTATGTATCACTTACAAGAGCGAGCGTCTAACGCGGCCGCCAAGCGTGAGAGGTGT
AAGGGGTTGTGCTCGGAACTCGACCGCAGATACAAGAGGGCGCAGGCGGCCAGGGGGTAC
ATCACCGACCTCGTGGAGTGTCTGGACGAGAAGATACCTCAACTGCAAGCGTTGGAGGCC
CGGGCCCTGGCGCTTCATCGCAAGAGACGCGACCTGCTGGTGGAGAGGCGGAGGGCCGAC
GTGCGCGACCAGGCGCAGGACGTGCTCGCACTCGCCGCTCGCGCGGGGTCATCGAAGCCG
GTGGACAGCGAGGAGAAGCGTCAGCGTACTGCGGAGCGCGAGGGCCGGCGGCGGGCGAGG
CGGCTCAGGCGACAGGCGGCCGGCAACAACCAGCACAGGGACGGGGACTCCAGCGACGAT
GACCTGCCCCCAACCCTGCACCATCACTGTCAACAGGAGGCGGACGCGATCCGCTCTCTG
TCGAGTCAGTTGTTCGCGGACACGTTGTCGGCCTACCGCAGTGTGCAAGGAGTCTGCGGT
CGCATGGCAAGACTGAGGCGGACGCGCGGGTTGTACACGGACGCGTATGTCGCACAATGT
CTGCCGAAGTTACTGGCGCCGTATGTTAGACATCAGCTGATCCTCTGGAACCCGCTCGCT
GACGAAGACAACGAGGACTACGAGAAGATGGACTGGTACAAATGTCTCATGATGTACGGC
TGCAAGTCCGAGCGCCTGTCCAGCGACTCAGAGCAGTCTTCCTCCGACGAGGTTTCCGTG
ACCGAGCTGGCCGTGAGAGACGACCCCGACCTACTGCTGGTACCCACGATCATAGACAAG
GTCGTACTGCCCAAGATCACCGGTTAG
Protein sequence:
MSLFRKPKKIQRRVFCADDEEDGEPEAPVPPPPPIISNSRKENKQVKVTTLLSFADEEEE
GEVFKVKKSSQSKRLSKRRQKEKQRTDGDSNKYDNHMVEEKPSEEIEEPRKKVTLEGLIL
SGREALSADGAGDISEDSEEDNRGFHTYRAESVRAALAGAGGIPDAALIHAARKTRQQAR
ELGDFVPIKNDGGSRMMRDDDADDDDDDEADEGRIQVRGLELPSDRPERGTTAAASDDEA
QSEGEEWEEQQIKKAVPSIADITGDCIPLNPFAVPPPPDTPRHLRSLARPGQPPPATAQQ
LVEALRDRLSELHESRARTAQRMYHLQERASNAAAKRERCKGLCSELDRRYKRAQAARGY
ITDLVECLDEKIPQLQALEARALALHRKRRDLLVERRRADVRDQAQDVLALAARAGSSKP
VDSEEKRQRTAEREGRRRARRLRRQAAGNNQHRDGDSSDDDLPPTLHHHCQQEADAIRSL
SSQLFADTLSAYRSVQGVCGRMARLRRTRGLYTDAYVAQCLPKLLAPYVRHQLILWNPLA
DEDNEDYEKMDWYKCLMMYGCKSERLSSDSEQSSSDEVSVTELAVRDDPDLLLVPTIIDK
VVLPKITG