| New model in OGS2.0 | DPOGS202600 |
|---|---|
| Genomic Position | scaffold78:- 114332-119479 |
| See gene structure | |
| CDS Length | 1797 |
| Paired RNAseq reads | 7 |
| Single RNAseq reads | 45 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA006345 (3e-48) |
| Best Drosophila hit | Mlh1 (2e-09) |
| Best Human hit | DNA mismatch repair protein Mlh3 isoform 1 (3e-24) |
| Best NR hit (blastp) | PREDICTED: similar to mutL homolog 3 (E. coli) [Taeniopygia guttata] (2e-32) |
| Best NR hit (blastx) | PREDICTED: similar to mutL homolog 3, partial [Taeniopygia guttata] (1e-31) |
| GeneOntology terms | GO:0007130 synaptonemal complex assembly GO:0006298 mismatch repair GO:0007140 male meiosis GO:0007144 female meiosis I GO:0000793 condensed chromosome GO:0000795 synaptonemal complex GO:0001673 male germ cell nucleus GO:0006974 response to DNA damage stimulus GO:0005712 chiasma GO:0003682 chromatin binding GO:0008104 protein localization GO:0019237 centromeric DNA binding |
| InterPro families | IPR014790 MutL, C-terminal, dimerisation IPR003594 ATPase-like, ATP-binding domain IPR002099 DNA mismatch repair protein |
| Orthology group | MCL17621 |
Nucleotide sequence:
ATGGATTTGAAAAAAATACCAAAAGACGTCCAACGTTTGATTTCTGCTTCCGCTTACATA
AATACATTTACAAGAGCAATCGAAGAACTGATTTATAATTCACTTGATGGGGATAGTACA
TCAATTGCAATAAGAGTGTCTATAAAGGAAAACTTTATTCAAGTAATAGATAATGGATGT
GGTATCAAATCTGAAAATTTTTGTCTTCTAGGACAAAAATATACATCAAGTAAATATATT
GATATGTGTACATTGAAATCTGCCCCTAATAAATATGGTTATCGTGGTTTATCTTTAGCA
AGTGTTATAGGAATTTCACAGACTGTTTTAATTACTTCAAGATATAATGATTCTGACTCA
ACATGGCTAAAAACGTTTTGTAATGGAACAGAGAAGAATATTTGTATTGTATCAACAAGA
CCATCAAAAGGCACAACGGTAGAAATCAGAGGATTCCTATACAATCTAAACATTCAAAGA
AAAGCAATAAATCCTATAAATGAATTACAAAACATCAAATCATCTTTAGAGAAATTGTCA
TTAATTCACTGTGATGTATCTATTAGCTTAAGGGATGATTATAAGAATAAGATTATATTT
AAAATGTACAAAAAAAGAGATATTTATCAAACTTTATGGTCTTTATTTGATATTAATAAA
GAAGATGTTCAAGAATTGCAAGAATTATCACAAAGTTTGGATCCTATGAATTATTGCGAA
ACGTTTTTCCGACGCAGCGAAATGAGTGACATTGCCAAAGAATTTATGAACAGCTTCAAC
ATAAATACAAACGACCTGGGTTCTAACGAATGTGATCCTATTTCTAATGCTCACAATGAA
AATTTCAAACTTAATTACTCCAATGATGAAAAAATACAAGACGAAGAAAAAATATCACAA
AATTCAAACACTAATTCCGAACTGCACAGCGCAAAACGAAATTGTGTTGAAGATTTAAAA
ACTTTTGAATTGAAAAAACGTCATGACTTGATGCCGAAAGGTATGTCCCAAGTCTACAAG
ACTAGACTACAAAAACAAACTAATATAAGTATATCTCAAATCGACTATTACGAGAATATA
ATGTATGACAAATTTGCAGACGATGTTTTCGTAAAATCTAAAATATTTGCACCATCGATA
CAGAATGCTGAAGTCAATTCAAGGAAATTGAAGAATTGTGATATTAGAAATGATGATCTA
ATATTTAATGCCACGTCTTTGAGACAAGCCAAAATTCTAGGTCAAATAGATCGTAAATTT
ATTGCCACAAAAATGAACGGGAAGAAAACTGACGTTAATGTAGATTTTTTGGTACTCTTC
GATCAGCACGCGGTCGATGAAAGAGTTAAACTTGAAAGGAATTTAGCGGAATACTTTGAC
GGAGAACTCTGGCGTAGCGTTAAAGTAGATTCAATACCACTCAAGCTGAATGAAAACGAA
CTTGTCTATTTGCATAACCACAGACATAAATTCTCGCAATTCGGTTTACAGTGGACATTT
CAAGAGAACAAAATATCGATCAATTCTATACCTAAAGCAATTATAGGCAAAAATGCCAGA
CAGGCTTGTCGGAATGCAATTAAATTTGGCGATAACGTATCTCTAAGTGATTGTACAACT
TTGCTTAAGTCACTTTCATCCTGCAAAATCCCATTTCAATGCGCACATGGACGTCCTGTG
ATGACAGTCGTAATGGAACTTCCTAAAAACATTCGTAATTACAGGGTGGACAAGGAAAAG
ATTAAACAATTCAAATCACGTAAATATAATTCGAATAAATATATTGCTAGACATTAA
Protein sequence:
MDLKKIPKDVQRLISASAYINTFTRAIEELIYNSLDGDSTSIAIRVSIKENFIQVIDNGC
GIKSENFCLLGQKYTSSKYIDMCTLKSAPNKYGYRGLSLASVIGISQTVLITSRYNDSDS
TWLKTFCNGTEKNICIVSTRPSKGTTVEIRGFLYNLNIQRKAINPINELQNIKSSLEKLS
LIHCDVSISLRDDYKNKIIFKMYKKRDIYQTLWSLFDINKEDVQELQELSQSLDPMNYCE
TFFRRSEMSDIAKEFMNSFNINTNDLGSNECDPISNAHNENFKLNYSNDEKIQDEEKISQ
NSNTNSELHSAKRNCVEDLKTFELKKRHDLMPKGMSQVYKTRLQKQTNISISQIDYYENI
MYDKFADDVFVKSKIFAPSIQNAEVNSRKLKNCDIRNDDLIFNATSLRQAKILGQIDRKF
IATKMNGKKTDVNVDFLVLFDQHAVDERVKLERNLAEYFDGELWRSVKVDSIPLKLNENE
LVYLHNHRHKFSQFGLQWTFQENKISINSIPKAIIGKNARQACRNAIKFGDNVSLSDCTT
LLKSLSSCKIPFQCAHGRPVMTVVMELPKNIRNYRVDKEKIKQFKSRKYNSNKYIARH