| New model in OGS2.0 | DPOGS205878 |
|---|---|
| Genomic Position | scaffold1969:+ 29359-33652 |
| See gene structure | |
| CDS Length | 1836 |
| Paired RNAseq reads | 1050 |
| Single RNAseq reads | 3114 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA000120 (0.0) |
| Best Drosophila hit | vacuolar protein sorting 26 (7e-143) |
| Best Human hit | vacuolar protein sorting-associated protein 26B (6e-133) |
| Best NR hit (blastp) | PREDICTED: similar to vacuolar protein sorting 26, vps26 [Tribolium castaneum] (3e-158) |
| Best NR hit (blastx) | PREDICTED: similar to vacuolar protein sorting 26, vps26 [Tribolium castaneum] (5e-152) |
| GeneOntology terms | GO:0007040 lysosome organization GO:0006605 protein targeting GO:0006886 intracellular protein transport GO:0007034 vacuolar transport GO:0030904 retromer complex |
| InterPro families | IPR009069 MTCP1 IPR005377 Vacuolar protein sorting-associated protein 26 |
| Orthology group | MCL12155 |
Nucleotide sequence:
ATGAGTTTCTTTGGGTTCGGACAAACCGCGGACATCGAAATTGTATTCGACGATGCTGAC
AAACGAAAAGTGGCCGAAGTTAAAACGGACGATGGTAAAAAAGAGAAACTGTTGCTTTAT
TATGATGGTGAAACTGTGTCGGGGAGGGTTAATGTGACGCTGCGGAAACCAGGATCGAAA
TTAGAGCACCAAGGTATCAAAGTTGAGCTTATCGGTCAGATAGAGTTGTTTTACGACAGA
GGAAATCATCACGAATTTATATCGTTGGTTAAAGAACTCGCTCGTCCCGGAGATCTATTG
CAGCACACCTCCTATCCGTTCGACTTTGCGAACGTTGAGAAACCCTATGAGGTGTACACA
GGAGCCAATGTCAGGTTAAGGTACTTTTTACGAGCCACAATAGTAAGACGTCTTACAGAC
ATCACTAAAGAGGTGGACATAGCCGTTCATACGTTATGCAGCTATCCCGATGTACTAAAC
TCTATAAAAATGGAAGTAGGCATCGAAGATTGTTTACACATAGAATTTGAGTACAACAAA
TCAAAATACCACCTGAAAGACGTTATAGTAGGTAAAATTTATTTCCTCCTCGTACGAATC
AAGATAAAACACATGGAGATATCTATTATAAAGAAAGAAACGACAGGTTCTGGACCTAAC
ACCTTCACAGAGAATGACACAGTCGCTAAATATGAAATAATGGACGGTGCACCAGTTAGA
GGTGAAAGTATTCCTATTAGAGTATTTTTGGCTGGCTACGATCTAACTCCTACTATGAGA
GACATAAACAACAAATTTTCGGTAAGATACTTTCTAAATCTTGTTCTAATGGACACAGAA
GATCGCCGTTATTTCAAACAACAGGAAGTTACTCTGTGGCGGAAAAGTGACAAATCACGA
CTTCCGCTACACAATCCGCATCATCCTCAGAACTTAACGAATTCGCAGCACTACCAAATG
GCTGTTTCCAGCGAAGAGAACTTGGCAAGAGGTATTTCCCCATCAATGCCACCAGAAAGT
GCATTACAGAGATCTATTTCACCTCCAATGCCAAATGTTGATAAACATAACGGCCCCTCA
CAAATGGAACAAGAAGAACCAGATGTATTACCAAACAAACTGTCAAGTACTCACATCGAG
AATGAGCCCGAACAGGTTGAACAAGAAAAGACGAGTGAAAAGCCCAAACTAGCCGAAAAG
CCACTAGATAAACCACAACTAGAGGAAGTCCAGGAAGTGAATAATTCAGAGCATATCAAA
GAAAAGCCACAGAATGTTAGCAAACCTCAAATATCAATAAAACCATCGGTTTCGGAAAAA
CCTATAGCCGAGAAAGTTGCCATCGCCGAGAAACCGTTATTGGCAGAGAAGCCCATACTA
GAAAAGCCCACTTTGGCCGAGAAGCCAGTCCTCTCACAGACGGAAAGTGTAGAAGCAGCT
ACGAAAAACAACTTCCAAGAGGTCCGCTGTGATCGCGTCTTCGAGGCTATGCGACAGTGT
TGTCTAAAACATAAACCCGTGTCATTAGTTTGCGAAGGTTACCGCTTGGAGCCGAGGGTT
TTCGCCCCCGTGACTGATCGACCAGCTAAGGATTTACAATGTCTGTGTTGGACAATAACT
ATTGATTACTTTGCCTACGTCTCAAGAGAAATGAAATCCCGTCCCATACAAGTGATATGG
ACACACATCGTCGAAGCAAAACACTCGGTCAAAGAAGTTGGATATATAGATATCCTCGGA
CGTTTCAGATCACTTTCACAGTGTTGGGGCTCGGTGTGTTCTTTTCTAAGCCAATTTATG
ACATATTCTTCCGCGAGAGATTCGTTCCCGATCTAA
Protein sequence:
MSFFGFGQTADIEIVFDDADKRKVAEVKTDDGKKEKLLLYYDGETVSGRVNVTLRKPGSK
LEHQGIKVELIGQIELFYDRGNHHEFISLVKELARPGDLLQHTSYPFDFANVEKPYEVYT
GANVRLRYFLRATIVRRLTDITKEVDIAVHTLCSYPDVLNSIKMEVGIEDCLHIEFEYNK
SKYHLKDVIVGKIYFLLVRIKIKHMEISIIKKETTGSGPNTFTENDTVAKYEIMDGAPVR
GESIPIRVFLAGYDLTPTMRDINNKFSVRYFLNLVLMDTEDRRYFKQQEVTLWRKSDKSR
LPLHNPHHPQNLTNSQHYQMAVSSEENLARGISPSMPPESALQRSISPPMPNVDKHNGPS
QMEQEEPDVLPNKLSSTHIENEPEQVEQEKTSEKPKLAEKPLDKPQLEEVQEVNNSEHIK
EKPQNVSKPQISIKPSVSEKPIAEKVAIAEKPLLAEKPILEKPTLAEKPVLSQTESVEAA
TKNNFQEVRCDRVFEAMRQCCLKHKPVSLVCEGYRLEPRVFAPVTDRPAKDLQCLCWTIT
IDYFAYVSREMKSRPIQVIWTHIVEAKHSVKEVGYIDILGRFRSLSQCWGSVCSFLSQFM
TYSSARDSFPI