New model in OGS2.0 | DPOGS201644  |
---|---|
Genomic Position | scaffold763:+ 37056-43805 |
See gene structure | |
CDS Length | 1968 |
Paired RNAseq reads   | 81 |
Single RNAseq reads   | 243 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA008126 (2e-08) |
Best Drosophila hit   | cuticular protein 56F (7e-08) |
Best Human hit | ND |
Best NR hit (blastp)   | TPA: putative cuticle protein [Bombyx mori] (2e-54) |
Best NR hit (blastx)   | TPA: putative cuticle protein [Bombyx mori] (1e-58) |
GeneOntology terms    | GO:0008010 structural constituent of chitin-based larval cuticle GO:0005214 structural constituent of chitin-based cuticle |
InterPro families   | ND |
Orthology group | MCL18314 |
Nucleotide sequence:
ATGCTCGAATTGTGGAAAAACGTTAAGACGAACAGCACTGACTCTAACATCATGAAGGTC
TTCGTATTCATGAGTCTTCTGTCTTTCACTCTGGCTGAGCCACCAGTCGGAGACGGTTAC
CCTTCATCACGATCAGCTCACCACCACGGCCATGGACACCAAGGATCGCTGACTCAAGAG
TATGGACTTCCAGAATTTGGAGCACGGAACCAACAGGAGTACGCTGTAACAGCTGCAAGG
TCTCAACCTTCACAAACATACGGAACCCCGACGAGGTCACCTATCTCTCGGGAATATGGA
ACACCCAACCTTCGGTCAGGACTCTCCCAGGAGTACGGCCCTCCCAGTTTCAGATCCGCT
CCATCATTACAATATGGAGTCCCTCATTCCCGCGGCCTGTCTCCACAGTACGGTCCTCCG
ACCAGTCATTCCTCTCCATCCAGCCAAGATTCATATAAACAAGACGTCGTTATCCAAAGT
GCTCGTTTGTCTCAAGACTTCGCGCCACAAGTCAAATCTGCTTCTCTCCCAAGCTTCAAT
GCCAGTGCTGATTTCTCCTCAGACTCGTATTCAGTTCCACCTCAAGGATCCTACGATTAC
AACCAGCTCGAACAACGCACTCCGTCCCAAGACTATGGAGTCCCATCTCAGAGAAGCAAT
GAACAGTCTCCCGCTAACAAATACGGTCCTCCCGGTTTGAGGAGTGCTCAGTCGTTTGGT
CAAATAAGAAAGCAAGCGTCTTCGGCTGGACTTAATGCCAAGACTTCATCTGTGACAAGA
AGCTTCCAATCATCTTTCGGTTCCAAAAACTCTGCGTCACCCACCTCTGGAACTCCCCGG
TCTTTGTCCGCTGTATATGGAGCTCCGAGTTCAAGGAACTTTAATTCTTATTCCCAAAGT
CCAAAGACCGTTTCTCAGACTTATCTGCCCAGTTCCCGTACTGTGTCTCAGTCCTATGGG
GTTCCGAGCGAGCGTGGAGTCTCAACTGAATACGGTGTGCCAGAAAATGATTTTAACTTA
AAGAATAGTGCTGAAATACCACAGTATGATCTTGCAAGATCTCCGTCTTCTCTATACGGA
GCGCCTGAAGCCCGCATGCCCTCAGAGCAGTACGGAACACCACAGCAGTATAGTTCCCAG
GACTCTCAAGGATACAACTATGACAGAAATGCTCTCGACGAACTTCTGAACCAAGAGCCA
GCTAACTATGACTTCGGCTACAAAGTGAACGACCTTGAGAGCGGCAGCGACTTCGGTCAC
TCGGAGACGAGACAGGAGAACAGGGCCGAGGGCTCGTACTTCGTGGTGCTGCCTGATGGA
ACCAAACAGGATTGTTTCTATCCAAACATCGTGCAGGCAAAGCCGGATGAGGCCATTCTA
CCAAGAGCCTTCTCCGTGCCTACACAAACTCAGACCGTGTTCGTGTTGTTCCTCGTCGGT
GCCGCGGCGTTTGTTTCAGCGGAGTCTCCAATATCGAAGAGCTATCTTCCTCCGCCACCT
CCGAGTGACGTCATCACCTTCTCTAGAGCAGCTTCATCGGGCCAGGACTTCCGAAGAATT
CAGGAGCTAGGAGACATGAGCTCGGGTCTAACACACGGAGACAACAACTTTGAAAGGATC
AGTTCTAGGGGTCAGGGTGTCGGAGACGACGCTACGGGAAGGGGTCCCTCACAGGAACCA
GCGGATCCGGCCAAGTATATGTTCGGTTACTCGGTTAACGAGCTGGAGGGAGCAGACTTC
GGTCACAGAGAGGAGAGTTTCGAGGAGAGGAGCCAGGGTCAGTACCGCGTGATGCTTCCA
GTCGGCAGAGGACAGGCAGTGGACGACGGAGCTGAAGGTCGCGGGTTCCAACCCCAGGTG
GCCTACAGGAGCTCGGGCGCCTCGGCTGGGGGCTCTGGCTACGACTCCTCACACAAGGAA
TACAACCAGGGCGGCCGAGAGGGGCGAGGGGGGCGCTCAGGATACTGA
Protein sequence:
MLELWKNVKTNSTDSNIMKVFVFMSLLSFTLAEPPVGDGYPSSRSAHHHGHGHQGSLTQE
YGLPEFGARNQQEYAVTAARSQPSQTYGTPTRSPISREYGTPNLRSGLSQEYGPPSFRSA
PSLQYGVPHSRGLSPQYGPPTSHSSPSSQDSYKQDVVIQSARLSQDFAPQVKSASLPSFN
ASADFSSDSYSVPPQGSYDYNQLEQRTPSQDYGVPSQRSNEQSPANKYGPPGLRSAQSFG
QIRKQASSAGLNAKTSSVTRSFQSSFGSKNSASPTSGTPRSLSAVYGAPSSRNFNSYSQS
PKTVSQTYLPSSRTVSQSYGVPSERGVSTEYGVPENDFNLKNSAEIPQYDLARSPSSLYG
APEARMPSEQYGTPQQYSSQDSQGYNYDRNALDELLNQEPANYDFGYKVNDLESGSDFGH
SETRQENRAEGSYFVVLPDGTKQDCFYPNIVQAKPDEAILPRAFSVPTQTQTVFVLFLVG
AAAFVSAESPISKSYLPPPPPSDVITFSRAASSGQDFRRIQELGDMSSGLTHGDNNFERI
SSRGQGVGDDATGRGPSQEPADPAKYMFGYSVNELEGADFGHREESFEERSQGQYRVMLP
VGRGQAVDDGAEGRGFQPQVAYRSSGASAGGSGYDSSHKEYNQGGREGRGGRSGY