| New model in OGS2.0 | DPOGS215808 |
|---|---|
| Genomic Position | scaffold56:- 197922-200549 |
| See gene structure | |
| CDS Length | 1497 |
| Paired RNAseq reads | 770 |
| Single RNAseq reads | 1689 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA003211 (4e-148) |
| Best Drosophila hit | CG12007 (2e-67) |
| Best Human hit | geranylgeranyl transferase type-2 subunit alpha (4e-67) |
| Best NR hit (blastp) | AGAP009724-PA [Anopheles gambiae str. PEST] (1e-83) |
| Best NR hit (blastx) | Geranylgeranyl transferase type-2 alpha subunit, putative [Pediculus humanus corporis] (7e-88) |
| GeneOntology terms | GO:0004663 Rab geranylgeranyltransferase activity GO:0005968 Rab-protein geranylgeranyltransferase complex GO:0007155 cell adhesion GO:0008360 regulation of cell shape GO:0018346 protein amino acid prenylation |
| InterPro families | IPR002088 Protein prenyltransferase, alpha subunit IPR008940 Protein prenyltransferase IPR001611 Leucine-rich repeat |
| Orthology group | MCL15414 |
Nucleotide sequence:
ATGCAAAAAATTCAATCTAAAAGGAAAGAAGGGGAAGAAGATGATGAACAATTGGGTATA
ATTGAAAAGGTCTTACTTGCTAATCCTGATATTTATACGTTATGGAATATAAGAAGAGAT
ATATTGAGCAGTTTTAAGAAAATAAAATCCGAAGAAGAAATGGTAAAACTCTATGATTCA
GAACTGTGTTTAACCGAATACTGCCTTAAAGTTAATCCTAAATCTTACTGTGCTTGGCAT
CAGAGAGAGTGGGTCCTAGTTAATAGGTCTGATCCAAACTGGAAAAAAGAACTTGATCTT
TGCAATACATATCTCAAGATAGATGAAAGGAATTTCCATACATGGGATTACCGCCGTTTC
GTCATTGGCCAATGTAAGCCACCTTTGCAAGATGAATTTGACTATACCACGGAAAAACTA
TATGATAATTTCTCCAATTATTCAGCTTGGCATTATAGGAGTAAAATGTTAGTTGAATTA
TATCCTGACCTAGAAGGCGGACGACCAATTCAAGACAGCCATCATAAACATGAATTAAAA
ATGGTCCAGAGCGCAGCATTTACAGATCCCGATGATACAAGTGCTTGGTTTTATCAACGG
TGGTTATTGGGTGCAGTTAAAGTAACAATAAAACTAGTTGCATGTACGGTAACTCCATCT
AAAGTGGCTCTTGCCTGGAGTAAGAGTGTTTCAAAGGAATATTTAAATAACAAAATCCAA
CTTTACATAGATGATGAATGTGTCAATGGGGAATGGGAATCTTGTACAGGATATGAATAT
GACGATATCTGGTTACTCAAACATTCACATAAAATTTTTACTAAATCTCATATTAAGGTG
GAACATATAATGAATAATAATGGGAAACAGTTGATAGTGTGTAATGAGTATCAACCCTTA
GTGTATATTGGAAAAAGCGAAATTAGTTTTCAAAATCAGTACTCGAAACCTGTTGTAGAA
GAGTTAAATGATCAACTTGATTCCTGCAGACAGCTATTGGCCTTGGAGCCAGACAATAGA
TGGACATTATTGACAACAACAGTGTTCCTCCATTGTATAGATCCCAAATCACACCATCTC
GAAGTTATAGATAATTTGCAGAGATTAAAAAAATTAGACTCCCAAAGAGCTGGGTACTAC
AATGATTTAATATCAATGTGGAGTATTGAGCAACAGTTACAAAATGATTATAATGATAAT
ATTGAAAAATTTTATATTAGATTTGGTGAAAAACTTACAAGTTTACCTCATTTGCAATAT
TATAGCTTCTGTCAAACAGTTGACTTGTCAAATCAAGAATTAACATCAAGAATATTGCCA
ACACTTATCAAGCTACAACATTGCAAGATATTGGATCTGTCGAATAATAAATTAACATCT
CTGGATGGGTTCCCCGCATTACAATTGGAACAGTTAATTTTGAAAGGAAATGAAATTAAA
GAGGAGGATATAGCTTTGTTCCAAGAAAAACATGGTCTTACAAAAATAATTATTTAA
Protein sequence:
MQKIQSKRKEGEEDDEQLGIIEKVLLANPDIYTLWNIRRDILSSFKKIKSEEEMVKLYDS
ELCLTEYCLKVNPKSYCAWHQREWVLVNRSDPNWKKELDLCNTYLKIDERNFHTWDYRRF
VIGQCKPPLQDEFDYTTEKLYDNFSNYSAWHYRSKMLVELYPDLEGGRPIQDSHHKHELK
MVQSAAFTDPDDTSAWFYQRWLLGAVKVTIKLVACTVTPSKVALAWSKSVSKEYLNNKIQ
LYIDDECVNGEWESCTGYEYDDIWLLKHSHKIFTKSHIKVEHIMNNNGKQLIVCNEYQPL
VYIGKSEISFQNQYSKPVVEELNDQLDSCRQLLALEPDNRWTLLTTTVFLHCIDPKSHHL
EVIDNLQRLKKLDSQRAGYYNDLISMWSIEQQLQNDYNDNIEKFYIRFGEKLTSLPHLQY
YSFCQTVDLSNQELTSRILPTLIKLQHCKILDLSNNKLTSLDGFPALQLEQLILKGNEIK
EEDIALFQEKHGLTKIII