| New model in OGS2.0 | DPOGS205186 |
|---|---|
| Genomic Position | scaffold140:+ 116057-124908 |
| See gene structure | |
| CDS Length | 3210 |
| Paired RNAseq reads | 1188 |
| Single RNAseq reads | 3000 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA000880 (0.0) |
| Best Drosophila hit | CG9791 (0.0) |
| Best Human hit | ATP-dependent RNA helicase SUPV3L1, mitochondrial precursor (0.0) |
| Best NR hit (blastp) | PREDICTED: similar to ATP-dependent RNA and DNA helicase [Tribolium castaneum] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to ATP-dependent RNA and DNA helicase [Tribolium castaneum] (0.0) |
| GeneOntology terms | GO:0004004 ATP-dependent RNA helicase activity GO:0005524 ATP binding GO:0003676 nucleic acid binding |
| InterPro families | IPR001650 Helicase, C-terminal IPR003599 Immunoglobulin subtype IPR022192 Mitochondrial degradasome RNA helicase subunit C-terminal |
| Orthology group | MCL13851 |
Nucleotide sequence:
ATGTACAAAGGTTTTTCACGAATATGGACAGTTTATAGCATAGAAAGATTGCAGCCATTT
GTTTCTAATCTGGTGTTTGGTGTTTTAAATCCGCAAACTGAAAGACTTAGTCGTATAGGT
TATGTTTTTAAGAGAACTAAGAAACACGATAAAGGACCTTCGTCTTTATTTGTACCTGTG
CCGGTGAAACCAAACCCAGATGATATAAATGTAGGGGAAGAATTCACAGGCCGTTTGAAA
AAACAAGATTTATTAAAAATTTTAAACAAATTCTATCAAAAGCCAGAGGTTAGAGTTTTA
GCTTCGGAGAATGGTCTTGACGATCAGATATTGCATCAGGCCTTTTTATCTTTTAGAAGA
CATTGCTTAGAACATGATTTACCTCCAGATTTACATATAACAATAAGTGATATTTTAGTA
GGTGCAGGTAATGTGAATGACCTGTTTCCATATTTCCTTAGACATGCTAGGCTCGCATTT
CCACATTTAGATTGTTTAGATGATCTTAAAAAAATATCAGACTTAAGGACACCAGCTAAT
TGGTATCCTGAAGCGAGGAATATAAATAGAAAGATAATATTCCATGCCGGTCCCACAAAT
TCTGGGAAGACCTACCATGCAATGGAGAAGTTCCTGGCAGCAAAATCTGGGGTATACTGT
GGGCCTTTGAAGTTGTTAGCGACAGAAATCTATCACAAATCAAACAGCAAGGGTACCCCA
TGTGATTTAATAACGGGCGAAGAAAGACGGCATGCATCTCAGTATAAGACTTTAGTAGAC
AACGTAGAAGATAATAAGGAATTAGATCATGAACCGTTCTTACTGGAAGAGCCTGTTTTG
ACACCTTCAAAACATGTAGCATGTACGGTGGAAATGACTTCATTAAATGATACTTATGAT
GTAGCAATCATTGATGAAATTCAAATGTTGGGTGACAAAGGTAGAGGGTGGGCGTGGACT
AGAGCTGTTTTAGGTCTCAAAGCTGATGAAATACATTTATGTGGTGAAGCGGGCGCCATT
AGTTTGGTTGAAGAAATGTGTAACACGACCGGCGAAGAGTTAGAAGTGAGAACATATAAA
CGACTGACGGAGCTAAAGGTTGAGAATAGTGCGTTGGGCACATTAGACAATGTTAAGGCC
GGTGATTGTATTGTGTGTTTCAATAAAAATGATATATACAGTGTAAGTCGAGCTATTGAA
CAGAGGGGTCGCGAAGTGGCTGTTATATACGGTAGTCTGCCACCCGGCACTAAACTCGCT
CAAGCTAATAAGTTTAATGATCCAGAAAGTTCTTGTAAAGTTATGGTTGCTACTGATGCT
ATAGGACTCGGTATTAATCTGAGTATACGACGTATAATATTTTATTCTCTCATCAAGCCC
GTGATAAATGTTGACGGAGACAAGGAGATGGATGTCATAAGTATATCACAGGCGCTGCAA
ATAGCAGGTCGCGCTGGTAGATACGGCAGCGCTTGGGAGACGGGGTACGTGACCACCTTC
AAGTCCGAAGATCTCGCGACCCTGAAGACGCTCCTGTCCCAGCCTCCGGACCCCGTGACC
CAGGCCGGTCTGCATCCCACAGCTGAACAGATGGAACTATACGCCTACCACCTACCGCAC
GCTAGCCTCAGCAGTCTCATGGATATCTTCGTCCACCTGTGCACGGTTGACGCTACACTG
TACTTCATGTGTAACACGGAAGGGTTCAAGTTCCTGGCGGAGATGATCCAGCACGTGCCG
CTGCCGCTGAGGGCGAGGTACGTCTTCTGCTGCGCTCCCATCAACAATAAACTGCCGTTC
GTATGCGCCACCTTCCTCAAGATGGTGCGTCAGTATAGTCGTAATGAGCCCATCACTCGT
AACTGGATGTCTAACGTTGTGGACTGGCCACTGCCAGCACCGCGGACTATTATGGACCTT
GTACACCTGGAGGCAGTTTTTGATGTGCTGGAATTGTACCTTTGGCTCAGTTATCGTTTC
CCGGACATGTTCCCAGACGTGAAGCTGGTTAGAGAAATGGAAGTCGAACTGGATGCGATC
ATACAGCAGGGAATTTTCCAGATAACAAGATTATTAAGGAATTCAGAGCCGGTCCTTGAA
AGTGAGACAGATATGAGAGACTATGGCAAAGGGAAAAAGTTACATCTACACTCAAGACAA
GACGAGTCGAAGGGAAAGTTATCAGAAATGCTAGTTTCAAAGGGTTTAATAACACCACAG
ATGTTGAAGAAGTTACAACAAGAATTGAGCACAGATAAAACAGAAAAGAGAACGAAGGGA
AGGACCGCGGGCCGCGCGTTGCCGACCGCTGATCTAGATCAATCGTTTAGGATATTTAGG
ATCAATGGCAAGCAGACGATATTGGCGTTTGAAAACGAAAATATAAATATACAATGTGAA
TCAGAATTTCCTATGACTTACTGCGGATTCGTTCACCCCACTGGAAAGAGATTTTCATTT
ACAGATCTATCAGTGAATGATGGCAAATGTGTTCAGAAGATCAGAGCTACGAAAAGCGAC
GACGGGGAATGGGGTTGTCATATTGGAAGGAAGTCTATAAGATTGGAAACTATAAAGAAA
ATTCAAGTACGGATTGTGAATCAAGTGGCCGCGGTCGAACCTAACGTAACGGCTAAGCTA
AATAAACCTATAACACTAACTTGTGCAACAACTAAAGGCTTAGTCCCTTTGAGCTACTGT
CGCTTTGAACCACCAAATGGAAGATCGTTTAATATAGATTCATCAGTAACTAGTGAGCGT
CCAATTATGGATAAATACTATTACCCATCAAACAGCAGTTTGGATAGAGGGGATTGTGTC
GTGACAATCAATAAAGTGAAATACGAGGACATTGGTTTGTGGACATGCGGCGCGAGTTTG
GACGACGGCAAAGAATATGTTGATGTCATTAAGCTTGAAGTTGAAGGTATGCACACGATG
TCGACGGCTTCTGCGACGGGCGTGACATTGGGAGGCATTCTGATAGCAGTAGCTCTTGGG
ACGTTGGGTTATATAGCTTGGAAGAAACGCAGCTTTATAACAGGCACACCGAACGAGCAG
CAAGAGATAGAAACACATGAAATGGCTGAAACAGGGAGAGAATCCTCCGCTAGTCCTAGA
CCAGGGAGGATGGTCCCCAGTGTTGTGATACAGTCCCCATCAGAACCAGGAACATCACCC
TTAATGCAAAGAACCGAGAGCTCAAATTAG
Protein sequence:
MYKGFSRIWTVYSIERLQPFVSNLVFGVLNPQTERLSRIGYVFKRTKKHDKGPSSLFVPV
PVKPNPDDINVGEEFTGRLKKQDLLKILNKFYQKPEVRVLASENGLDDQILHQAFLSFRR
HCLEHDLPPDLHITISDILVGAGNVNDLFPYFLRHARLAFPHLDCLDDLKKISDLRTPAN
WYPEARNINRKIIFHAGPTNSGKTYHAMEKFLAAKSGVYCGPLKLLATEIYHKSNSKGTP
CDLITGEERRHASQYKTLVDNVEDNKELDHEPFLLEEPVLTPSKHVACTVEMTSLNDTYD
VAIIDEIQMLGDKGRGWAWTRAVLGLKADEIHLCGEAGAISLVEEMCNTTGEELEVRTYK
RLTELKVENSALGTLDNVKAGDCIVCFNKNDIYSVSRAIEQRGREVAVIYGSLPPGTKLA
QANKFNDPESSCKVMVATDAIGLGINLSIRRIIFYSLIKPVINVDGDKEMDVISISQALQ
IAGRAGRYGSAWETGYVTTFKSEDLATLKTLLSQPPDPVTQAGLHPTAEQMELYAYHLPH
ASLSSLMDIFVHLCTVDATLYFMCNTEGFKFLAEMIQHVPLPLRARYVFCCAPINNKLPF
VCATFLKMVRQYSRNEPITRNWMSNVVDWPLPAPRTIMDLVHLEAVFDVLELYLWLSYRF
PDMFPDVKLVREMEVELDAIIQQGIFQITRLLRNSEPVLESETDMRDYGKGKKLHLHSRQ
DESKGKLSEMLVSKGLITPQMLKKLQQELSTDKTEKRTKGRTAGRALPTADLDQSFRIFR
INGKQTILAFENENINIQCESEFPMTYCGFVHPTGKRFSFTDLSVNDGKCVQKIRATKSD
DGEWGCHIGRKSIRLETIKKIQVRIVNQVAAVEPNVTAKLNKPITLTCATTKGLVPLSYC
RFEPPNGRSFNIDSSVTSERPIMDKYYYPSNSSLDRGDCVVTINKVKYEDIGLWTCGASL
DDGKEYVDVIKLEVEGMHTMSTASATGVTLGGILIAVALGTLGYIAWKKRSFITGTPNEQ
QEIETHEMAETGRESSASPRPGRMVPSVVIQSPSEPGTSPLMQRTESSN