| New model in OGS2.0 | DPOGS206318 |
|---|---|
| Genomic Position | scaffold1708:- 7610-9053 |
| See gene structure | |
| CDS Length | 1110 |
| Paired RNAseq reads | 769 |
| Single RNAseq reads | 1926 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA014134 (6e-132) |
| Best Drosophila hit | RNA polymerase I subunit (3e-56) |
| Best Human hit | DNA-directed RNA polymerase I subunit RPA1 (3e-51) |
| Best NR hit (blastp) | PREDICTED: similar to DNA-directed RNA polymerase I largest subunit [Tribolium castaneum] (2e-94) |
| Best NR hit (blastx) | PREDICTED: similar to DNA-directed RNA polymerase I largest subunit [Tribolium castaneum] (1e-87) |
| GeneOntology terms | GO:0006360 transcription from RNA polymerase I promoter GO:0005736 DNA-directed RNA polymerase I complex GO:0003899 DNA-directed RNA polymerase activity GO:0005634 nucleus GO:0003677 DNA binding GO:0008270 zinc ion binding |
| InterPro families | IPR007081 RNA polymerase Rpb1, domain 5 IPR015699 DNA-directed RNA pol I, largest subunit |
| Orthology group | MCL40945 |
Nucleotide sequence:
ATGCGTTTCGTTTTTCTACCGTTTTCTCAATACAAAACGCAGTATACCGTGAAGCCACCG
CAAATAATAAAACACATGCAGAATAAATTCTTTAATGAGATGTTTGCGGTTATCCGAAAG
CAGGCGAAGAGTACTTGTGGTGTTTTGTGGGCTGCGGAGAAAGAAAAGAAACGTCGGGTC
GCTGATGATGAGGAGGACGAAGACAATTCCCCTGACCTTGAGGAACGTCAAGGTCAAGAC
GTGGACAGTTCGGATGATGAGGGGCCTCACGACGATGAAGACAATACAGACGTAAAAATA
CGTAAAAAACGTTCCGAAGAACAAGAATACGAAGATCCAGAGTCAGAAGAAGAAGAGAAA
TCTGATGACGATTTGGAAATAGATGAAAATAATACAAAAGAAAAAGATGATGATCTTGAA
ACGGTTGAAGAGGTAAACGCTGAAGATGCTAAAGCCATGGAAAAAGTAGTTGGGAAAATA
ACCAACGCGTCAAACTATACCTTTGACACCAAGAACCATAAGTGGTGTGAATTGACCGTG
TTCTTCCCGATAGCATTCCTGCGGGTAGACCTGTCCCAGGCCTTGCGCGACGCAGCCAAG
AATTCAGTCATATACGAAATCAAGAACATCAAACGGGCGATCACTAACAAGGAAAAGGAC
GTCCTATACCTCAAAACTGAAGGGATCAATATAGTACAAATGTCCAAGTACAGTCACCTC
TTAGATTTGAACAAGTTATACACGAACGACATTCACGCCATCGCAAACACGTACGGCATT
GAAGCGGCAAACAAAGTTATCATAAAAGAAATCCAGAACGTATTCAACGTGTACGGCATC
ACCGTGGACCCGCGCCACTTGACGCTGGTGGCGGATTACATGACGTACAACGGAATATTT
GAGCCCATGAGCAGGAAGGGGATGGAGGCGTCAACTTCACCTTTACAGCAAATGTCCTTC
GAATCGTCTTTGATATTCCTGAAGGAGGCTGTTCTGAACTCCAAGAAAGATTTCATCAGG
TCGGCGTCCAGCTGTCTCATGCTCGGCCAGCCGTGCCGGGCCGGCACGGGTTCCTTCAGT
TTGCAGCATTTCAGTAAAGTTGTCAGCTAA
Protein sequence:
MRFVFLPFSQYKTQYTVKPPQIIKHMQNKFFNEMFAVIRKQAKSTCGVLWAAEKEKKRRV
ADDEEDEDNSPDLEERQGQDVDSSDDEGPHDDEDNTDVKIRKKRSEEQEYEDPESEEEEK
SDDDLEIDENNTKEKDDDLETVEEVNAEDAKAMEKVVGKITNASNYTFDTKNHKWCELTV
FFPIAFLRVDLSQALRDAAKNSVIYEIKNIKRAITNKEKDVLYLKTEGINIVQMSKYSHL
LDLNKLYTNDIHAIANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLVADYMTYNGIF
EPMSRKGMEASTSPLQQMSFESSLIFLKEAVLNSKKDFIRSASSCLMLGQPCRAGTGSFS
LQHFSKVVS