| New model in OGS2.0 | DPOGS213670 |
|---|---|
| Genomic Position | scaffold487:- 44192-45448 |
| See gene structure | |
| CDS Length | 921 |
| Paired RNAseq reads | 179 |
| Single RNAseq reads | 486 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA010619 (6e-143) |
| Best Drosophila hit | TATA binding protein (1e-101) |
| Best Human hit | TATA-box-binding protein isoform 1 (1e-92) |
| Best NR hit (blastp) | RecName: Full=TATA-box-binding protein; AltName: Full=TATA-box factor; AltName: Full=TATA-binding factor; AltName: Full=TATA sequence-binding protein; Short=TBP; AltName: Full=Transcription initiation factor TFIID TBP subunit (6e-153) |
| Best NR hit (blastx) | RecName: Full=TATA-box-binding protein; AltName: Full=TATA-box factor; AltName: Full=TATA-binding factor; AltName: Full=TATA sequence-binding protein; Short=TBP; AltName: Full=Transcription initiation factor TFIID TBP subunit (8e-146) |
| GeneOntology terms | GO:0042797 tRNA transcription from RNA polymerase III promoter GO:0006359 regulation of transcription from RNA polymerase III promoter GO:0005666 DNA-directed RNA polymerase III complex GO:0042796 snRNA transcription from RNA polymerase III promoter GO:0008134 transcription factor binding GO:0000126 transcription factor TFIIIB complex GO:0006357 regulation of transcription from RNA polymerase II promoter GO:0005669 transcription factor TFIID complex GO:0003677 DNA binding GO:0005634 nucleus GO:0016251 general RNA polymerase II transcription factor activity GO:0006367 transcription initiation from RNA polymerase II promoter GO:0005515 protein binding |
| InterPro families | IPR012294 Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal IPR000814 TATA-box binding protein IPR012295 Beta2-adaptin/TATA-box binding, C-terminal |
| Orthology group | MCL12753 |
Nucleotide sequence:
ATGGATCAAATGCTTCCAAGTCCATATAACATACCAGGTATTGGTACTCCCTTGCACCAA
CCTGAAGAAGATCAACAGATTTTACCAAATGCTATGCAACAGCAACAACAACAACAACGC
ACAACAACAACTTCCTTGGTATCAATGGGTTCATCGCCGCTCGTGGGTTTTGGCGCCTCT
ATAATGGGCACACCTCAGAGAACGATGCATACGTATGCTCCAACAGCCAGCTATGCAACA
CCTCAACAGATGATGCAACCTCAAACACCGCAAAACTTAATGTCTCCATTGATAACGGGT
TCAAGTATAGCCGGTCAACAGATCCTAAACCAAATGAGTCCTGCACCCATGACACCTATG
ACTCCACATTCTGCAGATCCTGGAATATTACCTCAGTTGCAAAATATAGTTTCCACAGTA
AATCTTAATTGCAAATTAGACCTTAAAAAGATAGCCCTACATGCCCGCAATGCTGAATAT
AACCCTAAACGTTTTGCTGCCGTCATTATGAGGATACGAGAACCAAGGACTACAGCATTG
ATATTTTCTTCTGGCAAAATGGTTTGCACCGGTGCCAAGAGTGAAGAAGACTCCCGTCTT
GCTGCAAGAAAATATGCCAGAATTATACAAAAGCTAGGATTTACGGCAAAATTTTTGGAT
TTTAAAATTCAAAACATGGTTGGAAGTTGCGATGTTAAATTTCCAATTCGCCTGGAAGGC
TTAGTCCTAACACATGGACAATTTAGCTCTTACGAACCTGAACTCTTCCCTGGACTCATC
TACCGAATGGTGAAACCTAGAATAGTTTTACTGATATTTGTATCAGGAAAAGTGGTACTA
ACAGGTGCAAAAGTTCGCCAAGAAATATATGAAGCTTTTGATAATATTTACCCAATATTG
AAAAGTTTTAAGAAACAATAA
Protein sequence:
MDQMLPSPYNIPGIGTPLHQPEEDQQILPNAMQQQQQQQRTTTTSLVSMGSSPLVGFGAS
IMGTPQRTMHTYAPTASYATPQQMMQPQTPQNLMSPLITGSSIAGQQILNQMSPAPMTPM
TPHSADPGILPQLQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTAL
IFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFTAKFLDFKIQNMVGSCDVKFPIRLEG
LVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYEAFDNIYPIL
KSFKKQ