| New model in OGS2.0 | DPOGS208077 |
|---|---|
| Genomic Position | scaffold191:+ 59186-60961 |
| See gene structure | |
| CDS Length | 1146 |
| Paired RNAseq reads | 142016 |
| Single RNAseq reads | 449311 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA007786 (2e-173) |
| Best Drosophila hit | rhodopsin 6 (6e-115) |
| Best Human hit | melanopsin isoform 1 (2e-48) |
| Best NR hit (blastp) | long wavelength opsin [Danaus plexippus] (0.0) |
| Best NR hit (blastx) | long wavelength opsin [Danaus plexippus] (0.0) |
| GeneOntology terms | GO:0007602 phototransduction GO:0008020 G-protein coupled photoreceptor activity GO:0016028 rhabdomere GO:0016021 integral to membrane GO:0007186 G-protein coupled receptor protein signaling pathway GO:0007601 visual perception |
| InterPro families | IPR001391 Opsin, lateral eye type IPR000276 GPCR, rhodopsin-like, 7TM IPR001760 Opsin IPR017452 GPCR, rhodopsin-like superfamily |
| Orthology group | MCL10421 |
Nucleotide sequence:
ATGGCGATCACAAGCATGGATCCCGGACCAGGTGCCGCTGCGTTGCAAGCTTGGGGCGGC
CAAATGGCGGCCTTCGGTAGCAACGAGACCGTTGTTGACAAAGTACTCCCTGACATGTTG
CACCTCATCGATCCTCACTGGTACCAATTCCCGCCGATGAATCCCATGTGGCATGGACTA
CTTGGCTTTGTAATGGGCGTCCTTGGTTTCATATCGATCACTGGCAACGGAATGGTTGTC
TACATCTTCACGACCACTAAGACTCTCAAAACTCCATCAAACATTCTCGTTGTAAATCTT
GCATTCTCCGACTTCTGCATGATGGCCATTATGGCTCCGCCTATGCTGATTAACTGCTAC
AACGAAACTTGGGTGTTCGGACCCTTAGCCTGTCAACTGTACGCGTGCGCTGGATCATTG
TTCGGATGTGGTTCCATCTGGACTATGACCATGATCGCTTTCGACCGCTACAACGTCATC
GTAAAGGGCCTAGCTGCAAAACCAATGACCATCAATGGCGCTTTGCTGCGAGTGCTTGGT
ATCTGGGCCTTCTCCCTGGCATGGACTGTTGCTCCAATGTTCGGCTGGGGCCGATACGTA
CCAGAAGGCAACATGACTGCCTGTGGAACTGACTACTTCGACAAATCTTTCGCCAACCGC
TCTTACATCGTAATCTACTCGGTCTTCTGCTACTTTGCACCACTGTTTCTCATTATCTAC
TCCTACTTCTTCATTATTCAGGCTGTAGCAGCTCATGAAAAAGCGATGAGGGAGCAGGCG
AAGAAAATGAACGTTGCCTCTCTTAGGTCTTCCGACCAGGCTAACACCAGCGCTGAGTGC
AAACTGGCTAAGGTAGCATTAATGACGATCTCACTGTGGTTCATGGCGTGGACACCTTAT
CTGGTTATCAACTTCTGCGGCATCTTCGACGGTGCCCCTATCAGCCCCCTCGCGACCATC
TGGGGCTCTGTCTTCGCCAAGGCTAATGCCGTTTATAACCCAATTGTATATGGCATCAGC
CACCCTAAATACCGCGCGGCGCTGTATGCGAGGTTCCCAGCTCTGTCATGCCAAGCTTCA
TCTGACGACAACGTGTCCGCAGCATCTGCGGCCACCGCCTGCACCGAAGAGAAACCATCT
GCTTGA
Protein sequence:
MAITSMDPGPGAAALQAWGGQMAAFGSNETVVDKVLPDMLHLIDPHWYQFPPMNPMWHGL
LGFVMGVLGFISITGNGMVVYIFTTTKTLKTPSNILVVNLAFSDFCMMAIMAPPMLINCY
NETWVFGPLACQLYACAGSLFGCGSIWTMTMIAFDRYNVIVKGLAAKPMTINGALLRVLG
IWAFSLAWTVAPMFGWGRYVPEGNMTACGTDYFDKSFANRSYIVIYSVFCYFAPLFLIIY
SYFFIIQAVAAHEKAMREQAKKMNVASLRSSDQANTSAECKLAKVALMTISLWFMAWTPY
LVINFCGIFDGAPISPLATIWGSVFAKANAVYNPIVYGISHPKYRAALYARFPALSCQAS
SDDNVSAASAATACTEEKPSA