| New model in OGS2.0 | DPOGS209953 |
|---|---|
| Genomic Position | scaffold128:- 195000-200011 |
| See gene structure | |
| CDS Length | 2076 |
| Paired RNAseq reads | 1642 |
| Single RNAseq reads | 4174 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA011340 (0.0) |
| Best Drosophila hit | tomosyn, isoform F (2e-96) |
| Best Human hit | syntaxin-binding protein 5 isoform b (1e-78) |
| Best NR hit (blastp) | hypothetical protein TcasGA2_TC001102 [Tribolium castaneum] (8e-154) |
| Best NR hit (blastx) | hypothetical protein TcasGA2_TC001102 [Tribolium castaneum] (9e-142) |
| GeneOntology terms | GO:0017075 syntaxin-1 binding GO:0007269 neurotransmitter secretion GO:0016082 synaptic vesicle priming GO:0008021 synaptic vesicle GO:0016079 synaptic vesicle exocytosis GO:0007163 establishment or maintenance of cell polarity GO:0016021 integral to membrane GO:0016192 vesicle-mediated transport |
| InterPro families | IPR019775 WD40 repeat, conserved site IPR000664 Lethal(2) giant larvae protein IPR013577 Lethal giant larvae homologue 2 IPR011046 WD40 repeat-like-containing domain IPR015943 WD40/YVTN repeat-like-containing domain |
| Orthology group | MCL10508 |
Nucleotide sequence:
ATGACGGCTCATGCAGACGGAGCACTGGCCACCTGGAGCACACGCTCGCCGAGACCCACC
TCGTTGTCCTATCCTCATGCGAAAGCGAACAAGGAGGGGAAACCGGAGCCATGTAAACCG
ATCCACAGATTGGAATGGAAGACTTCGAGGACGGGCGAGAGTCTGGTGATCTTCTCTGGT
GGCCTGCCGACGGACAAGGCGGGCCGCACGCACAGCATCACGGTCCTCAACGGGAAGAGC
ACCACCGTCTTAGAGATGGAACACACCGTCGTCGACTTCGTCACGCTCTGTGAGAGTCCG
CACGCTGCTGACTACCAGGAGCCATACGCCATCGTGGTCCTCCTCCAAAACGACCTGGTG
GTCATCGACCTGCTCTCCCCCGGCTACCCCTGCTTCGAGAATCCCTACCCCATGGACATA
CACGAGTCTTCAGTTACCTGCTGCTACTACTTCGCTGATTGTCCTTCAGATTTGATCCCA
GCATTCTACTCAGTGGGTCGTCAAGGTAACAAGAAGACGGCCGGCTTCAGTGACAAACTG
TGGCCCATCAACGGCGGGGAGTGGGCTCCGGCCTCCTGCTCCTACAGCGAGATCATACTG
ACCGGGCACGCTGACGGCAGTATCAAGTTCTGGGACGCGAGCGCGGGGACCTTACAAATA
TTATATAAACTGAAATGCTCCAAAGTGTTTGAGCGTCGTGGGGGTTACGAGGAGGAGTCC
CCGCTGTGCGTGTCTGCGGCGTCCCTGTGCGCGGAGTCTCGGCGGCTGGCGGTGGCTCTC
CCTCACGGACACGTGGTGCTGTTCAAGTTCAGGAAGACGGAGATGCACGCGGAGACTCAT
GTCATAGAGATACCTGTCATCAGTGACTCGGTCGAGGAGGAGACGTCTCCAGAAGTGGAG
AACAGTCGCTCGTGTTCCTTCAGCCGCGCCTCCGACTCCGCAGAAGGAGACGGGAAGAAG
TCGGGTGGATGGGCGGGCGCAGGGCTCCGTGTGCGGGGGTCCACGGGCACGGGCGGGTCG
CGGAGGGCCCCCGGCTTCCAAGCCGCGCTGGTGGCGCTGCAGCACGGCCCGCCCCACCCC
GTCACCACACTCACCATCAACTCGTCATATGGCCTTATGGCGTGGGGCGGGGAGCGCGGC
CTGGTGGTCGTGGACGTATGGCGTCGTTGTGTGGTGGCAGCTCTGCCCGCGCACGCTCTC
TACCTGCCCCACCCCGACCAACACACACACCTCCGTCACGACAGGCGCTCGCCCGACCTA
GACCAGCTGGAGGAGTCACCATCCAGTCCGGACGCCGTCGAGGAAGCTTTTCCCGATCCT
AAGCTCGACATGAGACGAAAATCCACCCCCTGGAAGAACTTCAATCTGAAACGACAACTC
TCGAAAGTAGATCTTAAGTTCAAAGCTGCGTTTGCAGCTCCAGAGAACGAAGATAATAAT
GAAAAAGGCAATTCACAATTCTACTGTGAGCCGTCCGCGCCGACACAAGTCAGCTCAGAC
CGGACTGAAGCAATGAATACGGATTCACCAGACGAAGTCGAAACCGGTGTTAAAGTGACA
GAAGAAGATAAGAGCCAGCTGTCTTCCCCGCTACGCGTTTGCTCGGACGTGTTCGAGAGA
ATGCATAAAGAGTTGCAGGAGAAACGATCGAGCGAAGACGTTTACGACAGAATGCACAAA
GAGCTTCAGGAGAGATGGCAGGACAAAGAGAGGAATGAGGACACTCCCGACATATCACCA
TCTCGATTAGGAGAAGAAGAAAAAGCCACGAGACCGGATAACCTTCCTCTGTTCGACGAA
GACGGCAAACCTTTGCGGCCGCCCCGAGGCAAAAGTAGGAGAAAAGAGGAGACGAGAGAT
CAAAGAGATCAAAGACTCCTCTCGGTGCCTAATATAAAGTACACTAAGCAAGAGTCAGTG
AAGGATCTGCGCAAGAAACAGGCCGCGGCTCAGCAACCGCAGTCGTTTGCCGGCAACCTG
ATGCGTCGTTTCAGTAAGTATCCCCGGGAGCCATCCATCAACCTCACCCCACTCACTCTC
GCGGCACCGCGGGTTGCGTTCCGTGTCGTGTGGTAG
Protein sequence:
MTAHADGALATWSTRSPRPTSLSYPHAKANKEGKPEPCKPIHRLEWKTSRTGESLVIFSG
GLPTDKAGRTHSITVLNGKSTTVLEMEHTVVDFVTLCESPHAADYQEPYAIVVLLQNDLV
VIDLLSPGYPCFENPYPMDIHESSVTCCYYFADCPSDLIPAFYSVGRQGNKKTAGFSDKL
WPINGGEWAPASCSYSEIILTGHADGSIKFWDASAGTLQILYKLKCSKVFERRGGYEEES
PLCVSAASLCAESRRLAVALPHGHVVLFKFRKTEMHAETHVIEIPVISDSVEEETSPEVE
NSRSCSFSRASDSAEGDGKKSGGWAGAGLRVRGSTGTGGSRRAPGFQAALVALQHGPPHP
VTTLTINSSYGLMAWGGERGLVVVDVWRRCVVAALPAHALYLPHPDQHTHLRHDRRSPDL
DQLEESPSSPDAVEEAFPDPKLDMRRKSTPWKNFNLKRQLSKVDLKFKAAFAAPENEDNN
EKGNSQFYCEPSAPTQVSSDRTEAMNTDSPDEVETGVKVTEEDKSQLSSPLRVCSDVFER
MHKELQEKRSSEDVYDRMHKELQERWQDKERNEDTPDISPSRLGEEEKATRPDNLPLFDE
DGKPLRPPRGKSRRKEETRDQRDQRLLSVPNIKYTKQESVKDLRKKQAAAQQPQSFAGNL
MRRFSKYPREPSINLTPLTLAAPRVAFRVVW