| New model in OGS2.0 | DPOGS209953 |
|---|---|
| Genomic Position | scaffold128:- 185668-190894 |
| See gene structure | |
| CDS Length | 1284 |
| Paired RNAseq reads | 271 |
| Single RNAseq reads | 1723 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA011341 (0.0) |
| Best Drosophila hit | tomosyn, isoform F (3e-90) |
| Best Human hit | syntaxin-binding protein 5 isoform b (6e-77) |
| Best NR hit (blastp) | PREDICTED: similar to tomosyn [Tribolium castaneum] (1e-160) |
| Best NR hit (blastx) | PREDICTED: similar to tomosyn [Tribolium castaneum] (1e-152) |
| GeneOntology terms | GO:0017075 syntaxin-1 binding GO:0007269 neurotransmitter secretion GO:0016082 synaptic vesicle priming GO:0008021 synaptic vesicle GO:0016079 synaptic vesicle exocytosis GO:0007163 establishment or maintenance of cell polarity GO:0016021 integral to membrane GO:0016192 vesicle-mediated transport |
| InterPro families | IPR001388 Synaptobrevin |
| Orthology group | MCL10508 |
Nucleotide sequence:
ATGTGTATTACACCAACCGGCCGCGTAGACAAGCTGGACAGCTCGTTTTCAAGATCGCGA
TCCAGCAGCATGTCAAGCTTGGAGAATATCTCTCAAGAAGGAATTCAGTGTCTAGCGTTT
GCCGACAGTTACACTAAAAAGTCTGATCCTTCAACGCTACTACCAACTCTCTGGATCGGT
ACTACTCTAGGTTCCGTTCTCACCATGATGATCAGTCTACCGGAAGCCGACATGCGTCAC
ACACAACCCGTGGTCGTCTCCACCAGCGGTGGTCCTATATTTAGGCTAAAGGGTTCAATA
TTGGCAATGTCCTTCTTGGATTGTAACGGTGCTTTAATCCCATATTCCTACGAGAGTTGG
AAGGACGATAGCAAAGACGTTCGTGACCGTCGCGAACGGACTCCTACCAAACAGAGCTCG
TCGGGAAGTAGCAGCCACGTGAGTCCCACGCCCGGCGCAGAGGCGGCGGCCGACAGACAA
TTCGTAGTCATCGCGTCTGAGAAACAGGCCCGGGTCGTCGCGTTGCCTAGTCAAAACTGC
GTCTATCGACAGCAAATTGTAGATACTGATTTCGTAGTGAAGTCTGAGATAGTCAGTCTT
AAAGACAGCGTCTGTCTTGTAAACTATCTTTCCACGGGCCACCTGGCGGCCTACAGTCTG
CCGTCACTTCGCCCGCTGGTGCACGCAGACTTCCTCCCGTTGACAGAGCTGAGCTTCCAG
ACACAGTCCAAACAGAGGGGTATCGTAGACCCAATGCTCTCCATTTGGGGCCAACAACTG
ATAGTTAACGAGGACACGGATCAAATAGCAAAGACGTTTTGCTTCAGTAACCGCGGCCAC
GGGCTGTACCTGGCGTCGCCGACGGAAATACAAAAGTTTACCTTAGATACAGAATTCTGT
CAACAGCTGAATGAGATGATAGGTGAACTGTTTCTTCCTCGAGACATGCCCGAAGCGCCG
AAAGAGAGCTTCTTCCGCGGTCTTTTCGGCGGAGGCTCCAGACCCCTAGACCGGGAGGAA
CTCTTCGGAGAGAGCAGCGGTAAACCGAGCCGCGCAGTCGCTAAACACATTCCAGGCCCG
GCGGGGATGGAGGCTCTGGGAGCCCGCGCCGGCGCCGCCTGCAGCGAGGTGTCTCGAGCG
CATCAGATGGTCGTGGAGCGCGGGGACAAGCTGTCGCAGCTGGAAGACCGTGCCGAACGA
ATGCACTCCCAAGCCTCCGAGTTCTCCTCCTCGGCGCACCAACTGATGCTGAAATACAAG
GACAAAAAGTGGTACCAGCTGTGA
Protein sequence:
MCITPTGRVDKLDSSFSRSRSSSMSSLENISQEGIQCLAFADSYTKKSDPSTLLPTLWIG
TTLGSVLTMMISLPEADMRHTQPVVVSTSGGPIFRLKGSILAMSFLDCNGALIPYSYESW
KDDSKDVRDRRERTPTKQSSSGSSSHVSPTPGAEAAADRQFVVIASEKQARVVALPSQNC
VYRQQIVDTDFVVKSEIVSLKDSVCLVNYLSTGHLAAYSLPSLRPLVHADFLPLTELSFQ
TQSKQRGIVDPMLSIWGQQLIVNEDTDQIAKTFCFSNRGHGLYLASPTEIQKFTLDTEFC
QQLNEMIGELFLPRDMPEAPKESFFRGLFGGGSRPLDREELFGESSGKPSRAVAKHIPGP
AGMEALGARAGAACSEVSRAHQMVVERGDKLSQLEDRAERMHSQASEFSSSAHQLMLKYK
DKKWYQL