| New model in OGS2.0 | DPOGS211787 |
|---|---|
| Genomic Position | scaffold897:- 32930-45435 |
| See gene structure | |
| CDS Length | 1980 |
| Paired RNAseq reads | 615 |
| Single RNAseq reads | 1445 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA004093 (0.0) |
| Best Drosophila hit | Sema-1a, isoform A (0.0) |
| Best Human hit | semaphorin-6A precursor (2e-84) |
| Best NR hit (blastp) | semaphorin-1a-like protein [Tribolium castaneum] (0.0) |
| Best NR hit (blastx) | semaphorin-1a-like protein [Tribolium castaneum] (0.0) |
| GeneOntology terms | GO:0016021 integral to membrane GO:0007411 axon guidance GO:0005886 plasma membrane GO:0007416 synapse assembly GO:0030215 semaphorin receptor binding GO:0004872 receptor activity GO:0016199 axon midline choice point recognition GO:0005515 protein binding GO:0008039 synaptic target recognition GO:0048813 dendrite morphogenesis GO:0031987 locomotion involved in locomotory behavior GO:0001964 startle response GO:0048854 brain morphogenesis |
| InterPro families | IPR001627 Semaphorin/CD100 antigen IPR003659 Plexin/semaphorin/integrin IPR015943 WD40/YVTN repeat-like-containing domain IPR016201 Plexin-like fold IPR002165 Plexin |
| Orthology group | MCL10173 |
Nucleotide sequence:
ATGTGCGTCGTCAAAGGAAAAGATGAGGAGAGCTGTCAGAACTACATTCGAGTCCTGGTG
TCTCTTGGTACCGGGCGACTGCTGGTCTGTGGTACCAATAGCTTCAGGCCGTTCTGCAGG
GAGTACAGTGTTCAACGCGACTCATACCACATGGAGAAGGAGAAATCTGGCCAAGCTGTT
TGTCCATACGACCCCGAGCATAACTCCACTGCTGTTTACGCAGATGCGGAATTATATTCT
GGGACAGTGGCGGATTTCAGTGGAATGGAGCCAATTATCTACAGGGAACCGTTACAAACA
GAGCCCTACGACTCTATGACGTTAAATGCACCAGATTTCGTGAATTCATTGGTTCACGGT
AATTTCGTGTATTTCTTCTTCCGTGAGACCGCCGTCGAGTACATCAACTGTGGAAAGGCG
GTATTCTCTCGAGTGGCGAGGGTTTGTCGAGACGATCGCGGCGGTCCTCACAGATTCAAA
CAAAGATGGACCTCTTTCCTGAAGTCGAGACTCAACTGCTCTGTGGCCGGGGACTTCCCC
TTTTACTTCAATGAGATACAATCAACCACGGAGTTGATAGAAGGTGTGTACGGTGGACTA
AATGCCCAACTAATATATGGAACTTTCACAACGCCACCGAACAGTATATCAGGGAGTGCT
GTGTGTGCGTTCAGTATGCAGGACATAGCTGACACATTCGAGGGAACCTTTAAGGAACAG
AGTGCTATTAATTCTAACTGGCTTCCAGTTAATAGCGCCAAGGTGCCGGAACCCCGACCG
GGTACATGTCACAACGATTCCAGACAGCTTCCGGACCAGACGTTGAACTTCATCAAAACT
CACGCCCTGATGGACGAATCAGTGCCAGCCTTCTTCGGAGAACCAATCGTTATTAGAACA
AGCTTCCACTATCGATTCACTCAAATCGCTGTCGATCCGCAAGTGAAGACTCCAGGCGGG
AAGGCGTATGACGTTTTGTTCATTGGAACAGATAACGGCAAGATCATAAAAGCCATCAAC
GCTGTGTCATACGACTCTAACAAGAGAGCGGTCCCGGTGGTGGTAGAGGAGCTCCAGGCC
TTCGCTGCCGGCTCTCCCGTACGAGCTCTTCGTGTAGCTCGAGCTGGTAGAGACGCCGCC
AGACTGATAGCTGTCTCTGATAGAGAGGTCCTAAGCTTGAGGCTCCATAGATGCTCCAGT
GATAAGATCAGCTCTTGCTCTGAGTGTGTGGCGCTTCAAGACCCGTACTGTGCGTGGGAT
AAGCAGGCTGGTCGGTGTCGTTCCTACTCACACGGAGTCAGCAGATGGTTGGATGAAAAC
TCTTTCTACCAAAGTGTCAGCACTGGCAGCCACGCCGCCTGCCCACACAGTAAAGACGCG
GGTGCTGTTGGTGGCCTTAGTTCAGGGCTATACGACCCACCCGGGGAAAACAAGGGTGAA
GTCATCAACATAGTGCAGGATAAAGACGGCAAGAATGGAAACAATAATAATGAAGGGCCA
GAAGTTCTAGCCGCTGATCCGCCACCAGCAGCGTATTCAGTGGAGACTCTGGCGTTGGCA
GTGGCAGCAGGGGCTCTAGCAGCTCTGGGCGCTGGCTTCGCTGCTGGCTACATCTGTGGT
CGGAGGTGCAAGAAGGACGATGATGACAACATGCCCTACCCTGATACTGAGTATGAATAC
TTCGAGCAACGGCAGAATATTAACAGGATCCAAGCCGAGCCGAAGCTGCTACAACAGGTC
GAGGAGGTGACGTACGCAGAGCCTGTCCTGGCTCCGCAGCCTAAACCAGCCTCACCACGC
GCCACGCTTCGGAAGCATCCCCCCTACCACCCGCACCACGAGACCCTGTTCCAGTTCCAA
CCCGACGCCTACCGTCGGGATAACTTCGGAACGCTTCGCTCTCATCAGGGCGATGGCTAC
CGTCGCGGTAACGACAACGGGTTCTCGACCACGCGCTCAGTGAAGAAGGTGTACCTCTGA
Protein sequence:
MCVVKGKDEESCQNYIRVLVSLGTGRLLVCGTNSFRPFCREYSVQRDSYHMEKEKSGQAV
CPYDPEHNSTAVYADAELYSGTVADFSGMEPIIYREPLQTEPYDSMTLNAPDFVNSLVHG
NFVYFFFRETAVEYINCGKAVFSRVARVCRDDRGGPHRFKQRWTSFLKSRLNCSVAGDFP
FYFNEIQSTTELIEGVYGGLNAQLIYGTFTTPPNSISGSAVCAFSMQDIADTFEGTFKEQ
SAINSNWLPVNSAKVPEPRPGTCHNDSRQLPDQTLNFIKTHALMDESVPAFFGEPIVIRT
SFHYRFTQIAVDPQVKTPGGKAYDVLFIGTDNGKIIKAINAVSYDSNKRAVPVVVEELQA
FAAGSPVRALRVARAGRDAARLIAVSDREVLSLRLHRCSSDKISSCSECVALQDPYCAWD
KQAGRCRSYSHGVSRWLDENSFYQSVSTGSHAACPHSKDAGAVGGLSSGLYDPPGENKGE
VINIVQDKDGKNGNNNNEGPEVLAADPPPAAYSVETLALAVAAGALAALGAGFAAGYICG
RRCKKDDDDNMPYPDTEYEYFEQRQNINRIQAEPKLLQQVEEVTYAEPVLAPQPKPASPR
ATLRKHPPYHPHHETLFQFQPDAYRRDNFGTLRSHQGDGYRRGNDNGFSTTRSVKKVYL