| New model in OGS2.0 | DPOGS201419 |
|---|---|
| Genomic Position | scaffold3443:- 2975-7304 |
| See gene structure | |
| CDS Length | 1173 |
| Paired RNAseq reads | 83 |
| Single RNAseq reads | 453 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA002573 (1e-158) |
| Best Drosophila hit | CG5009 (1e-126) |
| Best Human hit | peroxisomal acyl-coenzyme A oxidase 1 isoform c (3e-109) |
| Best NR hit (blastp) | PREDICTED: similar to acyl-CoA oxidase [Tribolium castaneum] (3e-159) |
| Best NR hit (blastx) | PREDICTED: similar to acyl-CoA oxidase [Tribolium castaneum] (2e-155) |
| GeneOntology terms | GO:0016401 palmitoyl-CoA oxidase activity GO:0055114 oxidation reduction GO:0003995 acyl-CoA dehydrogenase activity GO:0006635 fatty acid beta-oxidation GO:0050660 FAD binding GO:0005777 peroxisome |
| InterPro families | IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal IPR023570 Acyl-CoA oxidase, peroxisomal IPR009100 Acyl-CoA dehydrogenase/oxidase |
| Orthology group | MCL10186 |
Nucleotide sequence:
ATGCAGAACGAAGGCAAAATGACGGTTTCAAATTACAGGGATGTGGTAACTCAAATTCTA
GGCTCAACATTAGTACGCGACGGATCTCCATTAGGTCTACACTATATAATGTTTATGCCA
ACCATCATAACTCAGGCTAATGATGAGCAACAGGCTAAATGGCTCCCGAGATCCTGGAAC
TGCAACATCATTGGTAGTTACGCTCAAACTGAACTGGGTCATGGTACATTTGTTCGCGGT
TTGGAAACAACAGCAACTTACGATCCTTCCACTAAGGAGTTTGATCTACACAGCCCTTCA
CTCACCTCCTATAAGTGGTGGCCAGGGGGATTGGGTCATACGGCAAACTATTGTATACTG
ATAGCTCAACTTTACACGAAGGGAAAATGCCATGGAATACATCCGTTTATTGTCCAATTA
AGAGACGAAGAAACACATGTTCCTTTACCCGGAATTAAAATTGGTGATATCGGAGCGAAA
TTAGGACTCAATGAAGTTAACAATGGGTTTTTAGGATTTGATCATGTCAGAATACCTAGA
GACCAAATGTTAATGAAACACGCACAGGTTTTAGAGGATGGCACTTACATTAAATCACTT
AATAGTAAATTAAATTATGGGCCGATGGTTTTTACAAGGGTAGTGATTGTTTTTGACGTT
GCCAATTATTTATGTAAAGCGGCAACAATTGCTACAAGATATTCAGCTGTACGCAGACAG
TCACTGAAAAAACCTGGTGAACAAGAGTGTCAAATTCTTGATTATTTGACTCAACAGCAT
AAAATATTTCCTGCGATAGCTACTTGCCATGCTCTTCGTATCGCGGGAAAAAAATTGTGG
GATACATTCAATACTATAAATGAACAACTTATCGGTGGAAATCTGGAAAGGCTGCCTGAG
CTTCATGCTTTGGCATGCTGTTTAAAAGCGGTGAGTACATCAGATGCTGCTCAGTGTGTG
GAGCGCTGCAGACTGGCGTGCGGCGGCCACGGGTACATGCTGTCCTCCAACTTGCCGCTC
ACATACGGTCTGGTCACGGCCGCCTGCACTTACGAAGGAGAGAATACCGTCATGTTGCTG
CAGACTGCCAGATTTCTGGCCAAAACATGGCAACAAGTTGACAGTATAAAATTAACACCC
ACTGTGGAATATTTTAAAATATTCCGCAAATGA
Protein sequence:
MQNEGKMTVSNYRDVVTQILGSTLVRDGSPLGLHYIMFMPTIITQANDEQQAKWLPRSWN
CNIIGSYAQTELGHGTFVRGLETTATYDPSTKEFDLHSPSLTSYKWWPGGLGHTANYCIL
IAQLYTKGKCHGIHPFIVQLRDEETHVPLPGIKIGDIGAKLGLNEVNNGFLGFDHVRIPR
DQMLMKHAQVLEDGTYIKSLNSKLNYGPMVFTRVVIVFDVANYLCKAATIATRYSAVRRQ
SLKKPGEQECQILDYLTQQHKIFPAIATCHALRIAGKKLWDTFNTINEQLIGGNLERLPE
LHALACCLKAVSTSDAAQCVERCRLACGGHGYMLSSNLPLTYGLVTAACTYEGENTVMLL
QTARFLAKTWQQVDSIKLTPTVEYFKIFRK