| New model in OGS2.0 | DPOGS214691 |
|---|---|
| Genomic Position | scaffold15:- 43731-49436 |
| See gene structure | |
| CDS Length | 1545 |
| Paired RNAseq reads | 275 |
| Single RNAseq reads | 1497 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA005595 (9e-81) |
| Best Drosophila hit | GATAd (4e-16) |
| Best Human hit | transcription factor GATA-4 (8e-13) |
| Best NR hit (blastp) | PREDICTED: similar to GATAd CG5034-PA [Tribolium castaneum] (1e-42) |
| Best NR hit (blastx) | GATAd [Tribolium castaneum] (8e-28) |
| GeneOntology terms | GO:0005634 nucleus GO:0016251 general RNA polymerase II transcription factor activity GO:0008270 zinc ion binding GO:0043565 sequence-specific DNA binding GO:0003700 sequence-specific DNA binding transcription factor activity GO:0006355 regulation of transcription, DNA-dependent |
| InterPro families | IPR000679 Zinc finger, GATA-type IPR013088 Zinc finger, NHR/GATA-type |
| Orthology group | MCL17939 |
Nucleotide sequence:
ATGAAGAACCTGGAGAGTCGGCAGGCGGCTGTGACACTGCTGCAAATAAAAAACTACGAT
CCTACTAAATACGCCGTCAAGACTGAGGAAAGTCCTCACATAATGTTCAATAGCGTTCCG
AGTTTACCGCCCGCCGACAGAGCGAGAGAGGTTATGCATTGTAATGCCGTCATAGATATA
ATAAGCAAGGCTGTCGCGGTGGCACAGCGCGAGAACGTTGAATCTCAGAACTACCAGCCG
AATTACACGGGCGTCATAGACAGGACGTCCTCTACGGCCGCTGAGCTAGCGTACACGCAG
GACTACCCTGAGGAGCAGTACGCTGGGTACAATGCCGCTCATGACGTCACCAGCCCCGGC
AGCGATGACGACAACAAGGAAATGGACCTTGAACAGAACGAGCAGTGCGAGCGTGATACG
AGCGGCTTCTTACAGAGGAACCACGCCAGTAACAAATCCAGCTTCGTCGAGGAATACAAG
CAGCACGTGTTCGGGCAAGCTAAGAAGCATAATGACAGCTCGCCCGTGTACGAGGAGTGC
AGTCAGAGCAGCAGCGGCTCAGACCCTGATAGACTACAGATGGATATCTCTGAAGTATCG
CAGGACGACCCCGAAGAGACGCAATCGGTGCCATCAGCTCAGTCTTCCCCCAAGCCGCCT
CACGACAACGATACGGACAAGGAGTCCCTGTGGCAGGCGCTCCACAAACAGAACGGTCGT
GGCGGCGAGGCGACTCACCTGCTGCGGAGGCTCATCAACAGCAAACACCTGGGCATGACG
GTGTCCCCGCTCCGGGCCGCGCCCTCACCACTACCACAGACACACCCGCACACACACAAC
GGCACCGTGTCACCGAACGGTGAGTGGTCGAGTCCCACTCGCGGCGGGTCGGGGGCGGGC
GCCGGCACAGCACGCAGGAAGCAGAGCTGCCCGGCTCGAGCACAACCAGCCCTGGACACC
ACCGGCTGGACCAGCGACCAGCAGGAGAGTCCAGAGAGCGCGTCTAATACAACATCAGGC
GTGGTGTCGGGTGGGGCAAGGGGTCCTCGTGTGGAACTGTCCTGCAGTAACTGCGGCACT
CACACCACCACCATCTGGCGGAGGGACGCCCGCGGGGAGATGGTGTGCAACGCGTGCGGT
CTGTACTACAAGCTGCACGGTGTACCGCGGCCCAGCGCCATGAGGAGGGACACGATACAC
ACACGGCGCAGGCGGCCCAGACACGACGGGAAACATACTAGGAACACCTCGCCAGGCGGC
GGTGAGGGAGGGGGGACAGTGGTCAGTACTGAGGGGGAGGTGTCACGCGGTGGAGGCTCT
GGAGGGGGAGGGGGAGCCGCCGCAGGGGGGCCGTCTGACGGGGCCGAGGAGGCCGTGCTC
GCAGCGCTCAGGAGACAGCTACAACCTCACTTGCTGGCAGCACTACACGCACACACACCC
AGGGAACACACGCACACACGTACACAGGGCCGCAGCGTGTCGGAGTACGATGAGGCGCCC
CTGAACCTGGTGGCGAGTCACGTGGCCGCCGAGGAGACGCGCTGA
Protein sequence:
MKNLESRQAAVTLLQIKNYDPTKYAVKTEESPHIMFNSVPSLPPADRAREVMHCNAVIDI
ISKAVAVAQRENVESQNYQPNYTGVIDRTSSTAAELAYTQDYPEEQYAGYNAAHDVTSPG
SDDDNKEMDLEQNEQCERDTSGFLQRNHASNKSSFVEEYKQHVFGQAKKHNDSSPVYEEC
SQSSSGSDPDRLQMDISEVSQDDPEETQSVPSAQSSPKPPHDNDTDKESLWQALHKQNGR
GGEATHLLRRLINSKHLGMTVSPLRAAPSPLPQTHPHTHNGTVSPNGEWSSPTRGGSGAG
AGTARRKQSCPARAQPALDTTGWTSDQQESPESASNTTSGVVSGGARGPRVELSCSNCGT
HTTTIWRRDARGEMVCNACGLYYKLHGVPRPSAMRRDTIHTRRRRPRHDGKHTRNTSPGG
GEGGGTVVSTEGEVSRGGGSGGGGGAAAGGPSDGAEEAVLAALRRQLQPHLLAALHAHTP
REHTHTRTQGRSVSEYDEAPLNLVASHVAAEETR