| New model in OGS2.0 | DPOGS212023 |
|---|---|
| Genomic Position | scaffold221:- 329426-335616 |
| See gene structure | |
| CDS Length | 1227 |
| Paired RNAseq reads | 2215 |
| Single RNAseq reads | 7440 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA010178 (4e-78) |
| Best Drosophila hit | B52, isoform C (3e-70) |
| Best Human hit | serine/arginine-rich splicing factor 4 (6e-58) |
| Best NR hit (blastp) | splicing factor arginine/serine-rich 6 [Bombyx mori] (2e-92) |
| Best NR hit (blastx) | splicing factor arginine/serine-rich 6 [Bombyx mori] (6e-78) |
| GeneOntology terms | GO:0005634 nucleus GO:0000398 nuclear mRNA splicing, via spliceosome GO:0003729 mRNA binding GO:0006376 mRNA splice site selection GO:0035062 omega speckle GO:0016607 nuclear speck GO:0005515 protein binding GO:0003676 nucleic acid binding GO:0000166 nucleotide binding GO:0000381 regulation of alternative nuclear mRNA splicing, via spliceosome GO:0048024 regulation of nuclear mRNA splicing, via spliceosome GO:0071011 precatalytic spliceosome GO:0071013 catalytic step 2 spliceosome |
| InterPro families | IPR000504 RNA recognition motif domain IPR012677 Nucleotide-binding, alpha-beta plait |
| Orthology group | MCL11360 |
Nucleotide sequence:
ATGGTTGGATCCCGGGTGTACGTTGGCGGGCTGCCTTTTGGTGTTAGAGAAAGAGACTTA
GAAAAGTTTTTTAAAGGATTTGGAAGAATAAGAGACATCCTTATTAAGAATGGATATGGT
TTTGTGGAATTTGAAGACTACAGAGATGCTGATGATGCAGTCTATGAATTAAATGGAAAA
GAATTGCTTGGTGAAAGGGTGGTGGTGGAGCCGGCGCGGGGCATCGACCGCAGCGCGGAC
CGCTACCGTCGCGACCGCTACTACGAGCGCGACCGCGGCCGATCGAGATACGATGACTAC
AATTATAGATACGGGCCGCCGACGCGTACGGAGTATCGACTTATAGTTGAAAACCTATCC
AGCCGCATTAGCTGGCAGGATTTGAAGGATTACATGCGTCAGGCTGGCGAAGTTACTTAC
GCGGATGCTCACAAGCAACATAGAAACGAAGGGGTTGTGGAGTTCGCAACTCATTCAGAC
ATGCGAGCTGCTATCGAGAAATTGGACGGTACTGAGCTGAACGGCCGCCGCGTCCGCCTG
GTGGAGGACCGACGTTCGTCCAGACGACGCAGCCGCTCCTCTTCCTCAAGGAGCCGCTCA
CGGTCACGAGACAGGCGCCGCTCACGATCCAGGTCTCGTTCTCGTGGCTCCCGCAGCCGC
TCCAAATCCAAATCTCGTCCAAAGAGCAAGAGCCCAGCTGCCAAATCTCATTCGAGATCT
CGCTCCAAAGACCGCAGCCGTTCCAGATCCGCTTCCCGCAAGTCTGAGCGCGGGTCGGCA
TCACGTCCGTCCCGTGAGCGTTCCGCGGGACGGAAGTCCGCAGAGCGGAACGGAAGGTCC
GCATCGCGCTCCAAGTCTCGCTCACCTATGGATGATAATAATATTATTCATATGACTATA
TTAAACTCACATTTATTAGGGAGCGATCTCGCTCACGCAGCAAGGAGGCGGGATCACCCA
AACGAGAGGAAGAGCGTCGTGAGAGCAAGTCTCGTTCAAGGTCTCGCTCCCGGTCTGGAT
CGCGCGAGCGGTCAGTCTCACGCGAGCGGTCGCGCTCCGCCTCGCCCAGGCAAAATGGAG
ACGAACGGGCCGCCGACGAGCGCTCCCCGCGCAGCGGAGACTGAGGGGGCACTAGGGAGT
GATGCGGGGGCGGGAGGGGGGAAGCTCACAGTAGACTGGACGGACGGTTACATGGCAAAG
AAAAATCGTACATCTGTTACTATCTGA
Protein sequence:
MVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGK
ELLGERVVVEPARGIDRSADRYRRDRYYERDRGRSRYDDYNYRYGPPTRTEYRLIVENLS
SRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTELNGRRVRL
VEDRRSSRRRSRSSSSRSRSRSRDRRRSRSRSRSRGSRSRSKSKSRPKSKSPAAKSHSRS
RSKDRSRSRSASRKSERGSASRPSRERSAGRKSAERNGRSASRSKSRSPMDDNNIIHMTI
LNSHLLGSDLAHAARRRDHPNERKSVVRASLVQGLAPGLDRASGQSHASGRAPPRPGKME
TNGPPTSAPRAAETEGALGSDAGAGGGKLTVDWTDGYMAKKNRTSVTI