| New model in OGS2.0 | DPOGS208703 |
|---|---|
| Genomic Position | scaffold661:- 100848-104402 |
| See gene structure | |
| CDS Length | 1416 |
| Paired RNAseq reads | 2459 |
| Single RNAseq reads | 6016 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA003348 (3e-82) |
| Best Drosophila hit | Fip1 (8e-28) |
| Best Human hit | pre-mRNA 3'-end-processing factor FIP1 isoform 3 (5e-25) |
| Best NR hit (blastp) | PREDICTED: similar to conserved hypothetical protein [Nasonia vitripennis] (2e-40) |
| Best NR hit (blastx) | PREDICTED: similar to CG1078 CG1078-PA [Tribolium castaneum] (4e-36) |
| GeneOntology terms | GO:0005515 protein binding GO:0006398 histone mRNA 3'-end processing GO:0005634 nucleus |
| InterPro families | IPR007854 Pre-mRNA polyadenylation factor Fip1 |
| Orthology group | MCL16418 |
Nucleotide sequence:
ATGGCAGACGCTGCTGTAGAAACCGCTCCAGCAGATGAAAATGATGATAATTGGTTATAT
GGAGAATCAGCGAGTGAACAAATCGAAGCGGAAGCATCAACTACTGATGAAAAAACACAA
GAACAGGAAAATGCTAATAAGGAGAGAATAGATGATGATGGTAAAGTACAAGAAGAGACA
GAGACAAATGAGGGTAACAATGAAGACTCTCACTTCAACGATGAACACTTTGGTGAGGTG
GACAGAGATGATCAGGATCAGACGAATGGAGACGCCGACAGTCAGGACAACGGGGACACC
GACTCTGATGATAGTGATGACGTCAAAGTAACGATTGGAGAAATTAAGTCAGGACCACAA
GCTTATGCCAGTTTGAATATAAAACGTGGTGTTGGACTTGTAGCAGCTGGAACTGAGAAG
CCTCGTCAAGGTCCAGCGGCCGGTAACAAAGTGACTCTTGAAGACTTAGATGGTCCCGGA
AGCATCAACGGCGTGCCAGCGCTAGAGTTTAATATTGACACTATTGAAGATAAACCCTGG
AACAAACCTGGAGCTGACATATCTGATTACTTCAATTACGGTTTCAACGAGGTGACCTGG
AGCGCTTACTGTGAGCGTCAGAGACGGATGCGTGTTAGTGAGGCCGGTGTCGCTCTACAC
GCCGCCCCGCCGCCCCGCGCCGCCCCCACAGACAGACGGCAACAAGGTCCACCAAGACAT
GACGACATGCCGCCAGGGATGCCAAATAATTACCAGTCCAGAGAGAACACTATACAGGTG
ATGACAGCCGAGCGTCGTGAGTACGGCCGCGGTCAGGTGCGCGAGGCTGCACCACCCGCC
GACTACTTCAGCGCTCCGCCCCCCGACCACTACTACCAGCCTCCGCCTCACGCGCCTCAC
GCTCCACACCTCCCTCCACACCAGCACACACCACACTCATACGAAGAACCCTGGGCTCAT
CCAGAACAGACAGGCTGGGCGCCGTCAGATATAAAGGAACTAACGCCCGGACCCATGGGA
CCGCCGATGCCGCTAGGCATGCCCCCCGTACACATGCCCGCGCCCTACCCGACATACCGC
TCGCACGTCACACACACACACGAAAGAGACCGGGACCGGGAACGGGAAAGAGACCGAGAC
CGGGACCGGGACCGGGACAGGACCCGCGACGACCGTGACCGACGGGACCGGGACCGGAGG
GATGAGGAGGAAAGAGACAGGGATCGTGAACGTTCACGCTCCATTAAACCGGAGAGGATA
CGAGAGAAATCGTACCGCCGTGAGCGGTCTCGTTCACGTTCCCGCCGTCACAAGTCCCGG
TCCCGGTCTCCGAGACAACGGGAACGTTCCCGGGACAGGGAGAGGAGTATGAAGCCCAAG
AACAAGGATGCCAAGGAAAAGGACGAAGATAAATAA
Protein sequence:
MADAAVETAPADENDDNWLYGESASEQIEAEASTTDEKTQEQENANKERIDDDGKVQEET
ETNEGNNEDSHFNDEHFGEVDRDDQDQTNGDADSQDNGDTDSDDSDDVKVTIGEIKSGPQ
AYASLNIKRGVGLVAAGTEKPRQGPAAGNKVTLEDLDGPGSINGVPALEFNIDTIEDKPW
NKPGADISDYFNYGFNEVTWSAYCERQRRMRVSEAGVALHAAPPPRAAPTDRRQQGPPRH
DDMPPGMPNNYQSRENTIQVMTAERREYGRGQVREAAPPADYFSAPPPDHYYQPPPHAPH
APHLPPHQHTPHSYEEPWAHPEQTGWAPSDIKELTPGPMGPPMPLGMPPVHMPAPYPTYR
SHVTHTHERDRDRERERDRDRDRDRDRTRDDRDRRDRDRRDEEERDRDRERSRSIKPERI
REKSYRRERSRSRSRRHKSRSRSPRQRERSRDRERSMKPKNKDAKEKDEDK