New model in OGS2.0 | DPOGS208126  |
---|---|
Genomic Position | scaffold61:+ 65007-67601 |
See gene structure | |
CDS Length | 1173 |
Paired RNAseq reads   | 12 |
Single RNAseq reads   | 27 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA001404 (2e-08) |
Best Drosophila hit   | ND |
Best Human hit | ND |
Best NR hit (blastp)   | PREDICTED: similar to polyprotein [Acyrthosiphon pisum] (4e-36) |
Best NR hit (blastx)   | PREDICTED: similar to polyprotein [Acyrthosiphon pisum] (7e-47) |
GeneOntology terms    | GO:0006278 RNA-dependent DNA replication GO:0003964 RNA-directed DNA polymerase activity GO:0003723 RNA binding |
InterPro families   | IPR000477 Reverse transcriptase |
Orthology group | ND |
Nucleotide sequence:
ATGAATGTACGCGGCGCGTGTGAAGTCGGTAACGCGGTTCGCGGGATACTGACAGCCTCC
GTTCTCCGAGGGGCGAGCCTGCGCGGTCCAAATCCGTCTAGAAATACACAGCACGCAGAA
ATAGTTCAGCAGCTACTGAGGAGCTACGTTGAGCAGACGATAGCCCCAGAGAAAGACCCC
ATCGTCCTCTCCCCTGGCCAAGTGCAGCGTATGATTCGCCGCACTAAGCTTCGAAAGGCC
CCGGTTCTGACAGAATCACTAACGAAGTTCTCCGTCACATTTCTGCGCGTAGCACAGCAG
CGGCGACGCGCTTACATAATAGAGTCCTCAGGACCGGCCACTTCCCTATCCAATGGAGGC
TCGGCCGAGTCATCATGCTGCCGAAGCCTGGGAAGAACATCTTGCTGCCAGGGAGCTGTC
GCCCCATCACGCTGCAGTCAACCGTCTCGAAGGTTTTCGAGAAACTTCTGCTGCTGCACC
TCACACCACCCGTCCCACCACGCAATGAACAGTTTGCCTTCAGAGTTGAGCACTCAACCA
CGCTCCACAGCGCTCGCGAGGGTCCTGCACGTCCTCTCGGTGGCTCTCGACAAAAACGAG
TCAGCCGTCGCAGTGACGCTCGATATGGGGAAAGCTTTCGATCGCGTATGGCACCCCGGC
CTATTGTACAAGCTGGCCACATTCACTACTCCTCGCCGAATAGTCAGGATTATGGCCACC
TTCCTGCGGGACAGGCCTTTCCAGGTGTCGGTGAAACCCACCCCATCCACGGAACGCCCC
ATCAGAGCCGGAGTACCGCAGGGGAGCTGCCTGTTTCCGATATGTCACTCCAACTATACG
GATGACATCCCAGTGGCGGAACGTGCGACCTTAGCACTCTACGCCGACGACGCTGCCTAC
ATTACAACATCTCTGACTCCCGCCCACGCGGCGATGAAAATGCAGCGTCATATTGACCAG
CTCCCTCAGTGGCTGGATAAATGGCGTCTCAAAGTGAAGGTCTCGAAGACCCAGGCGATT
TCCATGGGTCGGCGACACCTACCGCAGCTGGCTGGCTGGCTCGAGCGGGGTAGCGGCGAG
AAGAGCCGAAAAGAAGAGAGACCACAAGAAGATGACCCCATCGGACGCCGGCTGGATTCT
AACCACCGGGGACGTGTCCTCGCCCACAGTTAG
Protein sequence:
MNVRGACEVGNAVRGILTASVLRGASLRGPNPSRNTQHAEIVQQLLRSYVEQTIAPEKDP
IVLSPGQVQRMIRRTKLRKAPVLTESLTKFSVTFLRVAQQRRRAYIIESSGPATSLSNGG
SAESSCCRSLGRTSCCQGAVAPSRCSQPSRRFSRNFCCCTSHHPSHHAMNSLPSELSTQP
RSTALARVLHVLSVALDKNESAVAVTLDMGKAFDRVWHPGLLYKLATFTTPRRIVRIMAT
FLRDRPFQVSVKPTPSTERPIRAGVPQGSCLFPICHSNYTDDIPVAERATLALYADDAAY
ITTSLTPAHAAMKMQRHIDQLPQWLDKWRLKVKVSKTQAISMGRRHLPQLAGWLERGSGE
KSRKEERPQEDDPIGRRLDSNHRGRVLAHS