| New model in OGS2.0 | DPOGS211570 |
|---|---|
| Genomic Position | scaffold282:- 128030-128893 |
| See gene structure | |
| CDS Length | 864 |
| Paired RNAseq reads | 338 |
| Single RNAseq reads | 967 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA006509 (6e-85) |
| Best Drosophila hit | CG5857 (5e-21) |
| Best Human hit | nucleoporin NDC1 isoform 2 (4e-14) |
| Best NR hit (blastp) | nucleoporin Ndc1 [Nasonia vitripennis] (8e-36) |
| Best NR hit (blastx) | nucleoporin Ndc1 [Nasonia vitripennis] (7e-37) |
| GeneOntology terms | GO:0017056 structural constituent of nuclear pore GO:0016020 membrane GO:0005515 protein binding GO:0016021 integral to membrane GO:0055085 transmembrane transport GO:0031081 nuclear pore distribution GO:0015031 protein transport GO:0005634 nucleus GO:0031965 nuclear membrane GO:0051292 nuclear pore complex assembly GO:0051028 mRNA transport GO:0005643 nuclear pore |
| InterPro families | IPR019049 Nucleoporin protein Ndc1-Nup |
| Orthology group | MCL15692 |
Nucleotide sequence:
ATGAAGTTTCCTATCGAATCTGAGAAACAGATGACAATATATGATGCATTATCACAGAGG
TCACAGTTCACTGGTTATTTGGGTGCTATAGACTTGAAACATTTGTCAATGGTAGACCCT
GTTAGAAGATCACAAATTTTTACTCTGTCACAACCTGGGGGGCACCCAAGGAACTGGAAT
AACTTGCTCGAGAAATGTCTATTCATTATAAAGGAATTCAATAAAGAGCTGGATAGTGTT
AATGGTGACACAAATTCAGTGGATGACATACATCTCAGAAAAGGATTGAGTAAGATACCA
CTCACACCTCCCTCTTCTTATTCCGGAGCTTTAAGGAACATGGCTCAATCACCCCACCTG
CTTGAACTAAAGGAACATAAAAGTTATAAGCTTGAGACCACTTTCGCTGCAACCGCTAAA
GAAGAATTCAACAACTTCCTTCAGAAGCTATGTCAGAAGCCCGGTATAAACTACTTCTTC
GGAGAGATGGTGAATACAAAATTGAAATTTATTTTCATTCAAGCTCAACCAGTGATGTGG
ACTTGTGAGGGGCTTTCCTATATTGTGTCCGCTTCATTGAAGGAAGACAAATATGGTATA
GTTCAGAATGATCTACCCCTAGTACTTTCTACTTTAGTTAATCTTAAACAAAACCTAGAT
AAGTTGACGAAGCCCGGAATAGTGCCAAGGAAGCATATTCTGAATGATGTGCTCGCCATA
AAAATAAAATCTGCCCTTTTGTCTTCAGTCAAGAGAAGTCTTTATAGAATTGTAATAACA
TTTTCTAAGTTTATACATGAGATACCACTAGATCCTGATGTTCAAATTGCTTTACAGCCA
TTCTTAATGTGTAAGGAAGCATAA
Protein sequence:
MKFPIESEKQMTIYDALSQRSQFTGYLGAIDLKHLSMVDPVRRSQIFTLSQPGGHPRNWN
NLLEKCLFIIKEFNKELDSVNGDTNSVDDIHLRKGLSKIPLTPPSSYSGALRNMAQSPHL
LELKEHKSYKLETTFAATAKEEFNNFLQKLCQKPGINYFFGEMVNTKLKFIFIQAQPVMW
TCEGLSYIVSASLKEDKYGIVQNDLPLVLSTLVNLKQNLDKLTKPGIVPRKHILNDVLAI
KIKSALLSSVKRSLYRIVITFSKFIHEIPLDPDVQIALQPFLMCKEA