| New model in OGS2.0 | DPOGS212384 |
|---|---|
| Genomic Position | scaffold1571:- 12350-17650 |
| See gene structure | |
| CDS Length | 1956 |
| Paired RNAseq reads | 1603 |
| Single RNAseq reads | 3562 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA012071 (5e-45) |
| Best Drosophila hit | lethal (1) G0007, isoform A (2e-130) |
| Best Human hit | pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 (3e-118) |
| Best NR hit (blastp) | PREDICTED: similar to pre-mRNA splicing factor ATP-dependent RNA helicase PRP16 [Acyrthosiphon pisum] (7e-180) |
| Best NR hit (blastx) | pre-mRNA-splicing factor ATP-dependent RNA helicase prp16, putative [Pediculus humanus corporis] (3e-146) |
| GeneOntology terms | GO:0008026 ATP-dependent helicase activity GO:0004004 ATP-dependent RNA helicase activity GO:0000398 nuclear mRNA splicing, via spliceosome GO:0005681 spliceosomal complex GO:0003676 nucleic acid binding GO:0005524 ATP binding GO:0000381 regulation of alternative nuclear mRNA splicing, via spliceosome GO:0002121 inter-male aggressive behavior |
| InterPro families | IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site IPR014001 DEAD-like helicase IPR001482 Type II secretion system protein E |
| Orthology group | ND |
Nucleotide sequence:
ATGTCGGACAGTGAAGAAAACCTGCATCGTTTGGAGGGAACTCCAAACAATGCTCCTGGA
GGTCTTATTATCAAGAAAAAAGATAAACCGCCTGATTTCCAATTTGCCAAACCGTCCTTG
TTAGGTCTAGATAAGTTGGCCGCTGCTAAAAGAATGCAGAACCGCTTAATTTCTTTTCAA
AACGAAGACAACTATGGAGATGATATTGAGGATAAAAGTGGTTCCAGTGGTGTAAGGGAG
CGGAAATATAGGAAGCATAATGAAGAAACCCCGACGTACACCGGTGGCTTATCAGAACAA
GCCCGAGCAAGGATGTTGGAAAGATTAGAAATGAAAGAAAAGAAAGCGAGAGAAAAAGGT
GTGCATAATTCAACACTAGAAGAGAAAAAGTCACATTCCAAAGATGAAGAAAACAGCCGA
TTTCACAATTATGGTCGTGGGCATCGTGACAAGGACAGAAGACGTGACTATGATAGAAGA
GACAGAGACAGATATAGGGATCGGAATGACAGGAATAAGAGCGAAAGGGATAGAAGGAGA
GATTCAGAGAGGAGGGAAAGAGACCGCGACACTGATAGAGATAGCTCACGACGGAGTTAC
TATGAACCCAGGTTTAAAGATGAACCAAGAACACCAAGCATAAAAGCTCTCAAACCAACC
GACAAAACAGCTTGGGATGATGACGACGATGACCCTAAGGCCGTAAGGAAGTCAAGTTGG
GACTTCCCCACACCACTGCCCAGAGACTTGGCGGATAGATCAGCTCGGAGTGAACGTAAA
CCCACCAGAGACTATAAAGGAAGAGCATACGAAGATACCATTAGAGCTACACCTCATAAA
TGGGTGAGCTCACGTCGAGGACTGGATGTAGACGACCCCGAGTGGCAGGAAGCAGAGAAG
AAATTAGATCGAGCCTGGTACAACATGGGAGAGGGTGAAACCGACGAATCGGATCCGTTC
GCCGGCACCAGCGCTGAGTATATAGCGAAGAAAGAAGAACAGATAGAGAAGAGAAGGAAC
CGGAAGGTGTCAGCGGCGAGGCAGCAGATAGACAGAGACAACGAGCTGTGGGAGAGGAAC
CGCATGCTCACCAGCGGGGTGGTGCACTCCATCAACGTCAACAACGACCTCGACGAGGAG
AACGTAGACCGAGTACATCTTCTAGTACACAATATCGTTCCGCCATTCCTCGACGGCAGG
ATAGTGTTCACTAAACAACCTGAGCCTGTTATACCGGTCAAAGACCCGACATCGGACATG
GCGATAAATGCTAGGAAAGGGTCCGCTTTAGTGAAGGCGTTCAGAGAACAGAAGGAAAGA
AGAAGGGCACAGAAGAAACATTGGAAGTTGGAGGGAACGAAGATTGGTAACATAATGGGC
ATACAGAAACAAGAGGAAGAAATAGAAGACGGACCCACGAAACAGGCGTACAAATACGCC
GAGCACTTGGATAAAGCGGGCGAGGAAGCGGAGTCCAAATCAGATTTCGTCAAGAAGTTG
TCTATAACGGAGCAGAGACGTTTCTTGCCCGTGTTCGCTGTCAGAGAACAACTCATGCAG
GTGGTGAGGGAGAACAACGTTATCATTATAGTCGGTGAAACCGGAAGTGGTAAGACGACC
CAACTGACACAATACCTCCACGAGGACGGTTACAGTAAGATGGGCGCCATCGGCTGTACG
CAACCCAGACGCGTGGCCGCCATGTCCGTGGCCAAGAGAGTTGCTGATGAAATGGGAGTT
AAATTAGGTGAGGAAGTTGGTTACGCGATACGTTTCGAGGACTGCACCAACCCGTCCACG
GTCATCAAGTACATGACGGACGGGATCCTGCTGCGGGAGGGTCTGCGGGACCCCGACCTC
GACCAGTACAGCGCCATCATCATGGACGAGGCGCACGAGAGGTCTCTCTCCACTGACATG
CTGTTCGGACTCCTGAGAGAGGTAAGTTACCTTTAA
Protein sequence:
MSDSEENLHRLEGTPNNAPGGLIIKKKDKPPDFQFAKPSLLGLDKLAAAKRMQNRLISFQ
NEDNYGDDIEDKSGSSGVRERKYRKHNEETPTYTGGLSEQARARMLERLEMKEKKAREKG
VHNSTLEEKKSHSKDEENSRFHNYGRGHRDKDRRRDYDRRDRDRYRDRNDRNKSERDRRR
DSERRERDRDTDRDSSRRSYYEPRFKDEPRTPSIKALKPTDKTAWDDDDDDPKAVRKSSW
DFPTPLPRDLADRSARSERKPTRDYKGRAYEDTIRATPHKWVSSRRGLDVDDPEWQEAEK
KLDRAWYNMGEGETDESDPFAGTSAEYIAKKEEQIEKRRNRKVSAARQQIDRDNELWERN
RMLTSGVVHSINVNNDLDEENVDRVHLLVHNIVPPFLDGRIVFTKQPEPVIPVKDPTSDM
AINARKGSALVKAFREQKERRRAQKKHWKLEGTKIGNIMGIQKQEEEIEDGPTKQAYKYA
EHLDKAGEEAESKSDFVKKLSITEQRRFLPVFAVREQLMQVVRENNVIIIVGETGSGKTT
QLTQYLHEDGYSKMGAIGCTQPRRVAAMSVAKRVADEMGVKLGEEVGYAIRFEDCTNPST
VIKYMTDGILLREGLRDPDLDQYSAIIMDEAHERSLSTDMLFGLLREVSYL