| New model in OGS2.0 | DPOGS200454 |
|---|---|
| Genomic Position | scaffold5931:- 116-8388 |
| See gene structure | |
| CDS Length | 1254 |
| Paired RNAseq reads | 860 |
| Single RNAseq reads | 2236 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA011186 (5e-177) |
| Best Drosophila hit | Snx6 (2e-115) |
| Best Human hit | sorting nexin-6 isoform b (4e-88) |
| Best NR hit (blastp) | sorting nexin [Aedes aegypti] (6e-167) |
| Best NR hit (blastx) | sorting nexin [Aedes aegypti] (3e-135) |
| GeneOntology terms | GO:0006886 intracellular protein transport GO:0007154 cell communication GO:0005515 protein binding GO:0035091 phosphoinositide binding |
| InterPro families | IPR001683 Phox homologous domain IPR014637 Sorting nexin, Snx5/Snx6 types IPR015404 Vps5 C-terminal |
| Orthology group | MCL14451 |
Nucleotide sequence:
ATGATGGACTGCATTGACGACAACACCAACGATCCCCTCTCAGCCCAAGTGTCCTCGCCG
TCTGGAGAAACTAAAGTTGATAAGAAAAAACCCAACGAGAATGTCTCGTTAGCGGATAAC
AGTTTACTGGTGGATATATCAGACGCTTTGAGCGAGAAAGAGAAAGTAAAGTTTACGGTA
CACACCAAGACAACGTTGCCTGAATTTCAGAAGTCTGAGTTTTTTGTCGTCCGACAGCAC
GAGGAATTTGTGTGGCTTCATGACAGATATGAAGAGAATGAAGAATACGCTGGTTATATT
ATTCCTCCTGCCCCTCCCCGTCCCGACTTCGACGCATCCAGGGAGAAGTTACAACGGCTC
GGGGAAGGAGAAGGAGCCCTAACACGAGAGGAATTCCTCAAGATGAAGGAGGAACTCGAG
GAGGAATACTTGGCCACTTTCAAGAAGACCGTGGCTATGCACGAGGTGTTCCTGCAGCGG
TTGGCATCACACCCTGTATTCAGGGGGGATGCGCATTTGAGAGTATTCCTCGAGTACGAA
CAGGATCTATGTGCGAAGCCGCGGGGCAGAATGGACCTTATTGGGGGTCTGATGAGGTCA
ATGACCACTACCACAGATGAGATTTATCTCGGTGCTACAGTCAGGGACGTTAACGACTTC
TTCGAACAGGAGACAGCGTTTCTCCAAGAATATTATTCTCATCTCAAAGAGGCTGTAGCG
AAAGTCGACCGTATGACCAGCAAGCATAAGGAGGTGGCAGACGCTCACATCAAGCTCTCG
TCCTGCGTCACCCAGCTGGCCACGCGTGAGGCTCAACACACTGAGCGGTTCCTCAGCAGG
GCTGCCGACACCTTCGACAAGTGCAGGAAAATCGAGGGTCGGATGGCATCAGATCAGGAC
CTGAAGCTGGCGGACACGTTACGTTACTACATGAGGGACACACACGCTGCCAAGGCGGTG
CTGGTGAGGAGATTACGGTGTCTGGCAGCATACGAAGCAGCCAATAGAAACTTAGAGAGG
GCGAGAGCTAAAAATAAGGACGTGCACGCCGCGGAACAGGCCCAAGCGGACGCCTGCGCT
CGTTTCGAACAGCTATCAGCTCGCGCCAGGGAGGAGCTGATAGACTTCAGGACACGAAGA
GTTGCGGCTTTCAAGAAAAGTTTAATAGATCTGGCGGAGCTGGAGATCAAGCACGCTCGG
GCGCAGCAGGAGTTGTTCAGGAAGTCGTTACAAGTATTGAGGGAATGCCAGTAA
Protein sequence:
MMDCIDDNTNDPLSAQVSSPSGETKVDKKKPNENVSLADNSLLVDISDALSEKEKVKFTV
HTKTTLPEFQKSEFFVVRQHEEFVWLHDRYEENEEYAGYIIPPAPPRPDFDASREKLQRL
GEGEGALTREEFLKMKEELEEEYLATFKKTVAMHEVFLQRLASHPVFRGDAHLRVFLEYE
QDLCAKPRGRMDLIGGLMRSMTTTTDEIYLGATVRDVNDFFEQETAFLQEYYSHLKEAVA
KVDRMTSKHKEVADAHIKLSSCVTQLATREAQHTERFLSRAADTFDKCRKIEGRMASDQD
LKLADTLRYYMRDTHAAKAVLVRRLRCLAAYEAANRNLERARAKNKDVHAAEQAQADACA
RFEQLSARAREELIDFRTRRVAAFKKSLIDLAELEIKHARAQQELFRKSLQVLRECQ