| New model in OGS2.0 | DPOGS201872 |
|---|---|
| Genomic Position | scaffold1259:+ 14460-19554 |
| See gene structure | |
| CDS Length | 630 |
| Paired RNAseq reads | 3244 |
| Single RNAseq reads | 12275 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA006045 (7e-102) |
| Best Drosophila hit | Rab-protein 5, isoform A (5e-86) |
| Best Human hit | ras-related protein Rab-5B (3e-92) |
| Best NR hit (blastp) | small GTP binding protein RAB5 [Bombyx mori] (2e-104) |
| Best NR hit (blastx) | small GTP binding protein RAB5 [Bombyx mori] (1e-100) |
| GeneOntology terms | GO:0006184 GTP catabolic process GO:0007032 endosome organization GO:0030100 regulation of endocytosis GO:0006810 transport GO:0016020 membrane GO:0000166 nucleotide binding GO:0005886 plasma membrane GO:0015031 protein transport GO:0005768 endosome GO:0005525 GTP binding GO:0030139 endocytic vesicle GO:0003924 GTPase activity GO:0007264 small GTPase mediated signal transduction |
| InterPro families | IPR020851 Small GTPase IPR013753 Ras IPR001806 Ras GTPase IPR005225 Small GTP-binding protein IPR003577 Ras small GTPase, Ras type IPR003579 Ras small GTPase, Rab type IPR003578 Small GTPase, Rho type IPR002041 Ran GTPase |
| Orthology group | MCL11036 |
Nucleotide sequence:
ATGGCAACGAACCGAAGTGCTCAGAGGCCAAACGGGGCGCCTCAGACTAAGGTGTGCCAG
TTCAAGCTGGTTCTGTTGGGTGAGTCGGCTGTGGGCAAGTCTTCATTGGTGCTACGTTTC
GTGAAGGGTCAGTTCCATGAGTATCAAGAGAGCACTATCGGAGCAGCATTCCTTACACAG
ACGCTCTGCCTCGACGACACCACTGTCAAGTTTGAAATTTGGGACACGGCAGGACAGGAG
AGATATCACAGCCTAGCTCCTATGTACTACCGGGGAGCGCAGGCCGCCATCGTAGTCTAC
GACATTACTAATCAGGACACATTCGGTCGCGCCAAGAACTGGGTGAAGGAGCTCCAGCGG
CAGGCGTCTCCGTCCATCGTGATCGCTCTGGCCGGGAACAAGAGCGACCTGGCCGCCAAG
AGGATGGTCGAGTTCGAGGAGGCGCAGGCCTACGCCGACGAGAACGGCCTGCTCTTCATG
GAGACCAGCGCCAAGACCGCCATGAACGTTAACGATATATTCCTAGCTATCGCGAACAAG
TTACCAAAGAGCGAGGTGTCCAGCGGCGGCGCGGGGACCAGAGTGCTCAACGACGCGGAC
GCGCCGCGGAGCTCCTCCTGCTGCAAGTGA
Protein sequence:
MATNRSAQRPNGAPQTKVCQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQ
TLCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQDTFGRAKNWVKELQR
QASPSIVIALAGNKSDLAAKRMVEFEEAQAYADENGLLFMETSAKTAMNVNDIFLAIANK
LPKSEVSSGGAGTRVLNDADAPRSSSCCK