New model in OGS2.0 | DPOGS212345  |
---|---|
Genomic Position | scaffold101:- 129733-132466 |
See gene structure | |
CDS Length | 1392 |
Paired RNAseq reads   | 110 |
Single RNAseq reads   | 788 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA004663 (7e-137) |
Best Drosophila hit   | CG7102 (4e-109) |
Best Human hit | small nuclear ribonucleoprotein E (7e-37) |
Best NR hit (blastp)   | GH11553 [Drosophila grimshawi] (4e-117) |
Best NR hit (blastx)   | GH11553 [Drosophila grimshawi] (3e-111) |
GeneOntology terms   | GO:0005515 protein binding |
InterPro families    | IPR001163 Like-Sm ribonucleoprotein (LSM) domain IPR011705 BTB/Kelch-associated IPR010920 Like-Sm ribonucleoprotein (LSM)-related domain IPR006649 Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type IPR006571 TLDc |
Orthology group | MCL13958 |
Nucleotide sequence:
ATGGCATACAAAGGCCCACCTAAGGTACAGAAGGTTATGGTACAACCCATTAACCTTATC
TTCAGATATTTACAAAACAGAAGCCGTGTACAAATATGGCTTTACGAGAATGTGAATTTG
AGAATCGAGGGTCACATTGTTGGTTTCGATGAATACATGAATATTGTTTTGGACGAAGCT
GAAGAAGTTCACATGAAAACCAAAAATCGCAAGCAAATTGGAAGAATTATGATGAAAGGA
GATAACATAACGCTTATACAAAATGTAAACCCGAACGCTACATTTAGTGAAATACATGGA
ACACTTGAGTTTGAGATCTTTGATTCAAAGAAATGTATGAAGCGAGCCCACAAGACAGGA
ATTCATTCCAGTGTAACGGCCAGTAGTGGTAAGAGCGCATCGTCTTTCTTAGAGCGCTGC
ATATCATTCATTGGAGACAATGCTGCGGATTGTGTCAAGACTAATGCGTTCCTCAACCTC
CCAAAAGAAGCACTCATCAAACTCATATCTTCAGACTTTCTGTGTCTGGAGGAGGAGGAG
GTGTGGCGTTGTGCTCTGGCGTGGTCCAAGCAGCGGGCCGGCGTGACGCAGCCCGCCGTG
CATTGGACGGGCGAGGAGCGAGCCCGGGTCTGCCAACACCTGGCCCCGCTCATGCAGCAC
GTGCGACTGCTACTCATCGACAGTACGGTGTTCGCGGAGGAGGTGGAACCCACGGGAGCC
GTGCCCATGGAACTGTCCTTGGAGCGCTACCGCCGCGCCGCACTGCACGCCGCACCGCGA
CACGAGCCCGACAAGAGGACGCAGCCTCGGTCGGCCGTGAACATGTTCGTGGGGTCGGTG
ATCCTGCAGCAGGACCGCGGGGGCCTGCAGTCCCTGGTGAACAGCTGGTGTGGGGCGCCG
GGGGGCCGGCGGGCCTGGCGGCTCGTGTTTCGCGCCTCCAGCCACGGCTACTCTGCCGCC
GCCTTCCACACGCACTGTGACGGAGTGGCGCCCGTGTTACTCTTAGTACAGCTGTCCCGG
GGCGAGGTCATAGGCGGCTACAGTACGGCGGGCTGGTCCCCGGGCGGGGCGGGCGGCTAC
GTGTCTTCGGAGCGCGGCCTGCTGTTCTCCCTGAGCGAGCCGCCGGTCCGCTACCCGCTC
CTCAAGAAACCCTTCGCCCTCTGCTACCATCCAGACTGTGGGCCCATATTCGGCGCGGGT
GCGGACCTGCTGATCTCCAACAACTGTAACATGAACAGTGACAGCTACAGTAACCTCCAC
TCGTACGGGGACGGCTCGCTAGGGTCACTGGGATCCCTGGGGTCTCCGGGGCCCCAGCCC
GCGCCCTCCTCGCTCGCATCTGAGTACAACTTCACCGTCCGTGACTACGAGATCTTCACG
CTCGACCACTAA
Protein sequence:
MAYKGPPKVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEA
EEVHMKTKNRKQIGRIMMKGDNITLIQNVNPNATFSEIHGTLEFEIFDSKKCMKRAHKTG
IHSSVTASSGKSASSFLERCISFIGDNAADCVKTNAFLNLPKEALIKLISSDFLCLEEEE
VWRCALAWSKQRAGVTQPAVHWTGEERARVCQHLAPLMQHVRLLLIDSTVFAEEVEPTGA
VPMELSLERYRRAALHAAPRHEPDKRTQPRSAVNMFVGSVILQQDRGGLQSLVNSWCGAP
GGRRAWRLVFRASSHGYSAAAFHTHCDGVAPVLLLVQLSRGEVIGGYSTAGWSPGGAGGY
VSSERGLLFSLSEPPVRYPLLKKPFALCYHPDCGPIFGAGADLLISNNCNMNSDSYSNLH
SYGDGSLGSLGSLGSPGPQPAPSSLASEYNFTVRDYEIFTLDH