| New model in OGS2.0 | DPOGS200021 |
|---|---|
| Genomic Position | scaffold1136:- 23443-26467 |
| See gene structure | |
| CDS Length | 1218 |
| Paired RNAseq reads | 795 |
| Single RNAseq reads | 2253 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA002363 (2e-156) |
| Best Drosophila hit | CG14641 (1e-131) |
| Best Human hit | pre-mRNA-splicing factor RBM22 (8e-131) |
| Best NR hit (blastp) | PREDICTED: similar to RNA binding motif protein 22 [Apis mellifera] (7e-161) |
| Best NR hit (blastx) | PREDICTED: similar to RNA binding motif protein 22 [Apis mellifera] (6e-150) |
| GeneOntology terms | GO:0003729 mRNA binding GO:0008270 zinc ion binding GO:0000166 nucleotide binding GO:0003676 nucleic acid binding GO:0005634 nucleus GO:0000381 regulation of alternative nuclear mRNA splicing, via spliceosome GO:0071011 precatalytic spliceosome GO:0000398 nuclear mRNA splicing, via spliceosome GO:0071013 catalytic step 2 spliceosome |
| InterPro families | IPR000571 Zinc finger, CCCH-type IPR000504 RNA recognition motif domain IPR012677 Nucleotide-binding, alpha-beta plait |
| Orthology group | MCL13844 |
Nucleotide sequence:
ATGGCTGTGTCGAAGTCTACGAATACATACAATCGTCAGAATTGGGAAGATTCCGATTTC
CCGATTTTATGTCAAACATGCCTTGGTGATAACCCCTACATTCGAATGACTAAAGAGAAA
TATGGCAAGGAGTGTAAGATCTGTGTACGCCCTTTCACCGTATTTAGATGGTGTCCGGGA
GCAAGAATGCGTTTCAAGAAAACAGAAATCTGTCAAACATGTTCAAAATTGAAAAATGTT
TGCCAAACATGCCTCTTAGATCTTGAATATGGATTACCAATACAAGTCAGAGATGCTGCT
CTTAAAATACAAGACGATCTACCTCGTAATGAGGTCAATAAAGAATATTATATTCAGAAC
TTAGATAGTCAAATGTCTAAATTTGATCCAAGCCAGCCGAGCAATTCCGCTCTGAAATCA
AAGGGTGCATCAGATCTACTGATGCGGCTAGCTAGAACGGCTCCTTACTACAAGCGTAAT
AGACCTCATGTGTGTTCGTTTTGGGTTAAAGGAGAGTGTAGGAGAGGTGAGGAGTGTCCT
TACCGACACGAGAAACCAACAGATCCCGACGACCCCTTGGCAGATCAAAATATTAAGGAT
AGATACTATGGTGTAAATGATCCCGTGGCGGAGAAGTTGATGCGTCGTGCTGCGGCTATG
CCAGCACTGCCACCTCCCGAAGACAGAACAGTCACTACATTATACATCGGCAATCTGCCG
GAAAATATTACTGAAGAGGAATTAAGAGGCCACTTCTATCAATACGGTGAAATAAGGTCA
TTGACTCTAGTCCCGAGGGCTCAATGTGCATTTGTTCAATATACTACTCGGAGTGCGGCC
GAGCATGCAGCCGAGAAGACCTTCAATAGGTTGGTGATAGCTGGCAGGAGACTTGCCATT
AAGTGGGGAAAATCACAAGGACGACAAGGTCCATCGGAGGCTATCGAGGCAGGTGTTCCA
TTGGAGCCAGTTCCTGGTCTGCCGGCTGCTCTGCCACCACCACCTGCCTTCCTCCATCCC
TTCCCGCCACAGATGCCGCCGCCGCCGAATCGTCCGAACGACTTCTTCAATCTGCATCAC
TACGGCGGTCCTCGGGCGTGGGCCTGGCCTCCTCCCGGGCCTCCGCCTTCCCACCCCGCG
CCCCCCGCGCCCTTGCACTACCCCAGCCAGGATCCGTCAAGACTCGGACACGCCCACTCA
GCGACGCCACAGACATAA
Protein sequence:
MAVSKSTNTYNRQNWEDSDFPILCQTCLGDNPYIRMTKEKYGKECKICVRPFTVFRWCPG
ARMRFKKTEICQTCSKLKNVCQTCLLDLEYGLPIQVRDAALKIQDDLPRNEVNKEYYIQN
LDSQMSKFDPSQPSNSALKSKGASDLLMRLARTAPYYKRNRPHVCSFWVKGECRRGEECP
YRHEKPTDPDDPLADQNIKDRYYGVNDPVAEKLMRRAAAMPALPPPEDRTVTTLYIGNLP
ENITEEELRGHFYQYGEIRSLTLVPRAQCAFVQYTTRSAAEHAAEKTFNRLVIAGRRLAI
KWGKSQGRQGPSEAIEAGVPLEPVPGLPAALPPPPAFLHPFPPQMPPPPNRPNDFFNLHH
YGGPRAWAWPPPGPPPSHPAPPAPLHYPSQDPSRLGHAHSATPQT