| New model in OGS2.0 | DPOGS210602 |
|---|---|
| Genomic Position | scaffold19:- 6557-10380 |
| See gene structure | |
| CDS Length | 1872 |
| Paired RNAseq reads | 8278 |
| Single RNAseq reads | 21872 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA014417 (1e-08) |
| Best Drosophila hit | CG7461 (0.0) |
| Best Human hit | very long-chain specific acyl-CoA dehydrogenase, mitochondrial isoform 2 precursor (7e-171) |
| Best NR hit (blastp) | PREDICTED: similar to acyl-coa dehydrogenase [Acyrthosiphon pisum] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to acyl-coa dehydrogenase isoform 1 [Tribolium castaneum] (0.0) |
| GeneOntology terms | GO:0017099 very long-chain-acyl-CoA dehydrogenase activity GO:0055114 oxidation reduction GO:0050660 FAD binding GO:0005811 lipid particle GO:0005875 microtubule associated complex |
| InterPro families | IPR009100 Acyl-CoA dehydrogenase/oxidase IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal IPR006089 Acyl-CoA dehydrogenase, conserved site IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain IPR006090 Acyl-CoA oxidase/dehydrogenase, type 1 IPR006092 Acyl-CoA dehydrogenase, N-terminal |
| Orthology group | MCL12087 |
Nucleotide sequence:
ATGAAAGGATCCAAGATGGTAACATGCGCAAGTCGCTGCTTCGGTGGCAGCAAGCGACTC
CTTCCGATGCGGAGCCGCTGCATGGCGACGGCCGCGGCCGCTGAAGCTCCCCGCGGAGCG
CGTCAGAGTACATCCTTCACACTGAACCTGTTCCGAGGTCAGTTCGAGCCGACGCAGGTG
TTTCCATTCCCGGAGCCACTCTCCGAAGACCAGCGTCAGACTCTCAGCGAACTCGTTCCA
CCGGTCGAGAAGTTCTTTCAGGAGGTGAACGATCCGGCCAAGAACGACGCGGACGCACAG
ATCGAGCAGGCTACTCTGTCGGGACTGTGGGATTTGGGTGCCTTCGGTCTCCAGGTGCCG
ACGGACTTGGGCGGACTGGGACTATCCAATACGCAGTACGCGCGGCTAGTGGAGGTGGTC
GGCGCTCACGACCTGGGCGTGGGCATCACGTTGGGTGCTCACCAGTCCATCGGTTTCAAG
GGCATATTGCTTTTCGGCACGCCGGAACAGAAGCAGCATTACTTACCGCGCGTTACGGGC
GGAGAATATGCGGCTTTCTGCTTGACAGAGCCGTCGTCGGGCTCCGACGCCGGCTCCATT
AAAACGAGAGCAGAACTGTCTCCTGACGGGAAGCACTTCATTCTAAATGGATCCAAAATT
TGGATCAGCAATGGTGGAATCGCTGAGATCATGACCGTGTTTGCTCAAACACCCGTCGAA
AAAGACGGAAAAAAAGTTGATAAAGTGACGGCTTTCATTGTGGAACGATCGTTTGGCGGC
GTATCGTCGGGTCCTCCCGAGAACAAGATGGGTATCAAGTGTTCAAATACCACGGAAGTG
TACTACGAGGACGTGCGGGTCCCGGTAGAGAACGTGCTGGGCGGAGTCGGGAACGGGTTC
AAGGTGGCCATGAATATCCTCAACAACGGCCGCTTCGGCATGGCGGCGGCGCTGGGCGGC
ACGCAGCGCGCCGCCCTGCGGCAGGCCGCGGAACATGCCGCCACTAGGGTTCAGTTCGGT
AAACGGCTCTGTGAGTTCGGTTCCGTCCAAGAGAAGCTGGCGCGTATGGCGATGCTGCAG
TACGTGACGGAGTCGCTCGCCTACATGGTGAGCGGCAACATGGACGCCGGCCACCAGGAC
TACCACCTTGAGGCGGCGGTGTCCAAGGTATTCGCGTCGGACTCCGCTTGGAAGGTTGTG
GACGAGGCGATCCAGATCCTCGGAGGTATGGGCTTCATGAAGGCCACGGGGCTGGAGCGC
GTGCTGAGGGACCTGCGAATCTTCCGCATCTTCGAGGGAACCAACGATATCTTGCGGCTC
TTCGTCGCTCTCACGGGAATTCAGTTTGCGGGCTCGCACCTCCAGGAGGTGATGCGTGCC
TTCAAAAACCCGACAGCGCATCTCGGACTCATTTTTAGCGAAGCCGGCAAGCGCGCCGGA
CGGGCCGTGGGGTTCGCGCGGGGCGCGGATCTCGACCCGCTGGTGGCGCCGGCGCTCCGC
CCCGCGGCGAGGGAGCTGGCGCGCCGGGTGTTGGAGTACGGGGCGTGTGTCGAGGCCGCG
CTCCGTAAATACGGCCGCGGCGTGGTCGACGAGCAGCTCGTACTGAACAGTCTGGCGGCC
GGCGCCATCGACGCCTACACGGCGGCCGCCGTGTTATCTCGTGCTTCGAGAGCGCATCGC
CTCGGGCTCCCGGCCGCCGACCACGAGCTGGCCATGGCCGAGACCTGGACAGAGGAAGCC
ACGGACCGCATGGGAGCTTTGGCGGGCGCTCTGGCCCCGCGGGCCTTGAGACACGGCGCG
CGGCTGACAGCTCTGGGGCGCGATGTGGCCGCCGCAGCCGGACAACCTTCGCGCTCCCCT
CTCGGCCTGTGA
Protein sequence:
MKGSKMVTCASRCFGGSKRLLPMRSRCMATAAAAEAPRGARQSTSFTLNLFRGQFEPTQV
FPFPEPLSEDQRQTLSELVPPVEKFFQEVNDPAKNDADAQIEQATLSGLWDLGAFGLQVP
TDLGGLGLSNTQYARLVEVVGAHDLGVGITLGAHQSIGFKGILLFGTPEQKQHYLPRVTG
GEYAAFCLTEPSSGSDAGSIKTRAELSPDGKHFILNGSKIWISNGGIAEIMTVFAQTPVE
KDGKKVDKVTAFIVERSFGGVSSGPPENKMGIKCSNTTEVYYEDVRVPVENVLGGVGNGF
KVAMNILNNGRFGMAAALGGTQRAALRQAAEHAATRVQFGKRLCEFGSVQEKLARMAMLQ
YVTESLAYMVSGNMDAGHQDYHLEAAVSKVFASDSAWKVVDEAIQILGGMGFMKATGLER
VLRDLRIFRIFEGTNDILRLFVALTGIQFAGSHLQEVMRAFKNPTAHLGLIFSEAGKRAG
RAVGFARGADLDPLVAPALRPAARELARRVLEYGACVEAALRKYGRGVVDEQLVLNSLAA
GAIDAYTAAAVLSRASRAHRLGLPAADHELAMAETWTEEATDRMGALAGALAPRALRHGA
RLTALGRDVAAAAGQPSRSPLGL