New model in OGS2.0 | DPOGS202675  |
---|---|
Genomic Position | scaffold3976:+ 6616-13355 |
See gene structure | |
CDS Length | 1383 |
Paired RNAseq reads   | 229 |
Single RNAseq reads   | 786 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA000843 (0.0) |
Best Drosophila hit   | CG12344 (8e-161) |
Best Human hit | glycine receptor subunit alpha-1 isoform 1 precursor (1e-47) |
Best NR hit (blastp)   | AGAP010694-PA [Anopheles gambiae str. PEST] (0.0) |
Best NR hit (blastx)   | AGAP010694-PA [Anopheles gambiae str. PEST] (5e-172) |
GeneOntology terms    | GO:0016935 glycine-gated chloride channel complex GO:0016934 extracellular-glycine-gated chloride channel activity GO:0045211 postsynaptic membrane GO:0006811 ion transport |
InterPro families    | IPR006202 Neurotransmitter-gated ion-channel ligand-binding IPR006029 Neurotransmitter-gated ion-channel transmembrane domain IPR006201 Neurotransmitter-gated ion-channel IPR018000 Neurotransmitter-gated ion-channel, conserved site IPR006028 Gamma-aminobutyric acid A receptor |
Orthology group | MCL16948 |
Nucleotide sequence:
ATGCGCTCACTGTGTCAGTTATGTAATGACGTCACGTCTAAGAGGAATCACACGTTGAAA
CCAAGGGTCGTGTTGCCAGAGAATTATGTTAAAGAGATGCGACCTCCTTCTCGCAAAGGG
GATCCCGTCGTTGTCGAATTCAGTATCTACGTGGTTGACGTTAATTCCATAAACGTTGAG
GACATGGACTTCAGAGTGGATATGTTTATACGACAAACTTGGATCGAAAGCAGACTACAG
TTACCAGAGGACATTTTTGAGGAAGGTGACGATCATGTTACTCTGCCTCCAGAATTCTTC
AACAATCTTTGGCATCCAGACCCTTACTTCCTAAACTCCAAAGTAACGGGAGGAGCTTGC
CATTTTTGTCACGAAACTGCTGAGATAGCCGAATTGACTCATAAATTTTCGTCAGTGACC
TTATACCGAAACCAGACAGTGAGGTATGCGGCCCGAATGCACGCTATCATTGCTTGCCAG
ATGGAATTTCAGCTTTATCCGATGGACATACAATCCTGTCCTATTTACATAGAAAGTTTT
TCCTATAGCAATCAAAAAGTGAGATTCCGCTGGAGTGTGGCAGGTGTGACTATCAATCCA
GAACTCAAGTTATTACAATATCATATCGGTGAACCGCTGCGTCTGGAAGAAACTAACGGT
TACATGATCGATAAGGACGGTAACTACTCCAGACTTGTGGTTTATTTTAGATTTGAACGT
CAAATTGGTCATCATTTAATTCAAACCTTTGCACCTTCCTCCCTTGTCGTGATGTTGTCC
TGGTTTAGCTTTTGGTTGGATCTAGACGCAATACCCGGTCGAGTTACATTGTTAGTTACT
TGCATGTTGACGCTTGTTACAATGTTTACTGGATTGAGAGCCGACATACCGCCAGTGGCG
TATGTAAAGGCATTGGATCTTTGGATGGCGGGCTGTATGATGTTTGTCTTCGCTGCTTTA
GGGGAGTTCGTGGTTGTAAAAGTGTTAGACAAACAATATCAAATGAACAAAACAAAAGCT
CAAGAATCGATGCCTAGAATAATTCCTGTGCGCCTTAATGGTGAAAAGGGATCTTGTGGC
ACTGTCGCTGCTTGGGAGGGAAGCGGAGTTCGATGTAGGAAAGTGGACCTAACCTCTCCG
ACATCACCTCCCGCAACTACCCCGGCTGCACACCAAGTACCAGGAGCAACTGCTCATCTG
GTGGGAGTTGAGAGGCGCCAAAGTATATTACAGGTGGCGTGGCTAGACGCGGACACCGGA
CAAGAAAGAGTTTTATGGCGAGAAATTGACAAGCTTTCGCGGGTTGTGTTCCCGGCATTA
TTTTTATTATTTGTTACAATGTACTGGCCAGTACTGTTATTGAAAACTAAGGCATCTTTG
TAG
Protein sequence:
MRSLCQLCNDVTSKRNHTLKPRVVLPENYVKEMRPPSRKGDPVVVEFSIYVVDVNSINVE
DMDFRVDMFIRQTWIESRLQLPEDIFEEGDDHVTLPPEFFNNLWHPDPYFLNSKVTGGAC
HFCHETAEIAELTHKFSSVTLYRNQTVRYAARMHAIIACQMEFQLYPMDIQSCPIYIESF
SYSNQKVRFRWSVAGVTINPELKLLQYHIGEPLRLEETNGYMIDKDGNYSRLVVYFRFER
QIGHHLIQTFAPSSLVVMLSWFSFWLDLDAIPGRVTLLVTCMLTLVTMFTGLRADIPPVA
YVKALDLWMAGCMMFVFAALGEFVVVKVLDKQYQMNKTKAQESMPRIIPVRLNGEKGSCG
TVAAWEGSGVRCRKVDLTSPTSPPATTPAAHQVPGATAHLVGVERRQSILQVAWLDADTG
QERVLWREIDKLSRVVFPALFLLFVTMYWPVLLLKTKASL