| Genomic Position | scaffold20104:- 181-5073 |
|---|---|
| See gene structure | |
| CDS Length | 1647 |
| Paired RNAseq reads | 169 |
| Single RNAseq reads | 656 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA004504 (2e-101) |
| Best Drosophila hit | Mtr3 (1e-25) |
| Best Human hit | exosome complex exonuclease MTR3 (2e-19) |
| Best NR hit (blastp) | mRNA transport regulator 3 [Bombyx mori] (3e-78) |
| Best NR hit (blastx) | mRNA transport regulator 3 [Bombyx mori] (2e-83) |
| GeneOntology terms | GO:0000175 3'-5'-exoribonuclease activity GO:0006396 RNA processing GO:0003723 RNA binding GO:0000178 exosome (RNase complex) GO:0004527 exonuclease activity GO:0006364 rRNA processing GO:0005634 nucleus GO:0016787 hydrolase activity GO:0004518 nuclease activity GO:0005737 cytoplasm |
| InterPro families | IPR020568 Ribosomal protein S5 domain 2-type fold IPR001247 Exoribonuclease, phosphorolytic domain 1 |
| Orthology group | MCL13111 |
Nucleotide sequence:
ATGCCACTGGATTATAGAAGATTTAATGGACCAGAAGACAGTGTATCGTACAGGCGTTTC
ACAGAGGATTATACGAAGGATTATAAGCAATTTCTTAAGGAATTAATCGACGAGAATGGA
CGTCGGAAAGGAGGGCGCGAAATGGATGAAGCGCGTACCTTGTTTGCTAGAACGGGAATG
ATATCACAAGCTAAGGGATCATCTTATATAGAACTAAAGAGAACAAAAGTCGCATGTTCT
GTGTTTGATCCAAGGGAAATTGTACACCAGAATGAATACAGTACCCTTGGACAGTTGTAT
TGTGAAGTTAAATATGCACCTTTCTCATGTCGGGGAGAACGTAAAGCTCTCGTTCCAGAT
TCAGATGAGAGGGCATTATCAGTGGCTCTCAAAAAGGCCTTAGAACCTGCTGTTTGCAGA
CATCTGTTCCCAAATTATCAGATCGACATATTCATATACATTCTAGAAAATGATGGAGCA
TGTCTGCCAGCAGCAATAAATGCAGCGGGGTTGGCTTTATCAGATGCAGCTGTACCAATG
TATGATATTATAACCGCTAGTTCTCTCGCTATAAGCGGAGACAAGGTGTTTGTCGACCCT
ACAGATGATGAGGAACAATTAGCGATCAGAGACCACGAAGGTGTAAACCACGGTGTGATC
ACTATGTCAATGTTGCCGGAGTTACAACAAGTGTCAGATTACCGACAGATTGGCTCGATG
GATGCCGATTGTGTTTTAAACGCACTTAGCATTCTTGAAAAGGAATGTAAGAAAATTGTT
CCATATGTACAGAGAGTTCTCGTACAGAATGCCATTAATAGTTTCGAACAACAAAAAAAG
TTGGAAGCGCAAGCAAAGGAGAGAGAGGAAGCCTTGAACGCAAAGATGGAAATATATCAT
TTAGTAATTCAGGCAGCCATTTTATTTGGAGATAGTGGTTACAAAAAAGAGTTGCATGTT
GAAAAACAATGTCCGGAGAATTCAGACCCTCTCTGCTTTGAGCCAAGGAGTATAATAGCA
ATAGGGGCCTCCCTGAGAATTTTAAACGTTTCTGAAAACAAAATAGCAGACATGTCTTGG
GCTAAGCCTCTTCGACGTCTCGAAGTTCTTATCGCAAAGAAAAATAATTTAGACAATGTT
GAGGCTACAGCAGATAGCTTATGCAGCCTTATATCTTTAGTCGAGATAAACTTTATCGAT
AATCCGATGACCAAAAAGCATCGATATAAGGAAATTATAATAGCGCGATGTGCACCTTTG
CGCGTTTTAGACAGTGTCGTTATTCACAACACATCCAGAACATTCCTTCAAAATTTCGAC
AAAGTAGTTCGTTTACGCCAGTTAAACGTTAAAAACAAAATAAAAATGTCACGACAAGGA
CTCGATGATTTCTTCGAGTTGAATATGTTGCCTGGACCGAAGGCTCAGAGTGCTATGTCT
ATATCAGAATTTTCGAATCAAAAACCGAGGATTTCAGCCATAGACTCCACTTATACTTTC
ATGCCAAGAGCCTTTTGGCGTAACAGGACTGCACCTCTTCGTGACACAATTCTGCCGTTG
GAGCCACCTCCAATGCCAAAAGAACCTTCGAAAGCCTCACCCGCCAAGGGCATATTAAAA
AAACCCATGCCAATGAAATATATTTGA
Protein sequence:
MPLDYRRFNGPEDSVSYRRFTEDYTKDYKQFLKELIDENGRRKGGREMDEARTLFARTGM
ISQAKGSSYIELKRTKVACSVFDPREIVHQNEYSTLGQLYCEVKYAPFSCRGERKALVPD
SDERALSVALKKALEPAVCRHLFPNYQIDIFIYILENDGACLPAAINAAGLALSDAAVPM
YDIITASSLAISGDKVFVDPTDDEEQLAIRDHEGVNHGVITMSMLPELQQVSDYRQIGSM
DADCVLNALSILEKECKKIVPYVQRVLVQNAINSFEQQKKLEAQAKEREEALNAKMEIYH
LVIQAAILFGDSGYKKELHVEKQCPENSDPLCFEPRSIIAIGASLRILNVSENKIADMSW
AKPLRRLEVLIAKKNNLDNVEATADSLCSLISLVEINFIDNPMTKKHRYKEIIIARCAPL
RVLDSVVIHNTSRTFLQNFDKVVRLRQLNVKNKIKMSRQGLDDFFELNMLPGPKAQSAMS
ISEFSNQKPRISAIDSTYTFMPRAFWRNRTAPLRDTILPLEPPPMPKEPSKASPAKGILK
KPMPMKYI