| New model in OGS2.0 | DPOGS209313 |
|---|---|
| Genomic Position | scaffold727:- 54468-56609 |
| See gene structure | |
| CDS Length | 2142 |
| Paired RNAseq reads | 2818 |
| Single RNAseq reads | 6965 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA013814 (0.0) |
| Best Drosophila hit | CG4896, isoform C (4e-66) |
| Best Human hit | RNA-binding protein 5 (2e-58) |
| Best NR hit (blastp) | PREDICTED: similar to RNA-binding protein [Acyrthosiphon pisum] (1e-94) |
| Best NR hit (blastx) | PREDICTED: similar to Rbm5 protein [Nasonia vitripennis] (4e-85) |
| GeneOntology terms | GO:0003729 mRNA binding GO:0005622 intracellular GO:0008270 zinc ion binding GO:0003676 nucleic acid binding GO:0000166 nucleotide binding |
| InterPro families | IPR000467 D111/G-patch IPR000504 RNA recognition motif domain |
| Orthology group | MCL11073 |
Nucleotide sequence:
ATGTCGTGGCGCGGACGAGACGAGCGAACCACCCGCTGGGGCGAGAACAGGGAACGCTCG
CCCGTCTGGGAGAAACGCAGCGAGAGCCCCGACAGACGGCCGCCGTCCCCGCGGGACCGT
CAGAGGGATCGACGGGATCGTCACGAGAGATACGACCGAGACCGACGTGATCGGGATAGG
GATAGTGAACGTTACAATCGCCGTTTCGACAAACGGGATCGCGAGCGGGATAGGCGGAGG
TCGCCACGACGATTGGAGGATAGGGATGTGCCAGCCGCGCCTTCGCCCCCTAAGATAAGC
GCCGACTACGACACTGGGGAGATTCAGTCTCGCAGTCGCTCCGGCAGTCGGGATCGTGGC
TACAAAGACTTCGACCACAAATACGATCGCGATAAAGACGATCAATCGGTCAACGCCTCT
CCTGGCGACTGGGTCTGCAAATGTGGCTCGTACAATTTTAAGAGACGTCAAGTGTGCTAT
AGGCGTAATTGTTCAGGCAAAAGGTCCGAGGGAGTCGTGTACGGTGACGGGCAGACCGCT
TCAGAGTGTAACGCCGGTATCACGAAGCGTTTACTGTTCCGACGGCTGGATGCTCTCACT
ACGGAGGAGAAAATCTTGGAAGTGGTGAAAGAGAGATGCTCTAAATCGGTGCTAGATTCC
ATTGCAGGTATAAAGGTCGGCCGGGAGACGTTGACGGGTGCTTCGAAGTGTCTCGCATAC
ATAAATTTCAATTCTCTAGCCGATTCGACGGCCGCTCATTCTGAACTACTGTCCTTAGAT
CCTCCTCTAGTCATTGATAACAGGGAAGTGCTGATATCGTTTTACAATGAACCACAGAAA
ACACAGAAGCCTCACGCCGAATATCCGAATTACTATAATCAGATGTCCAGTTATTCCAGG
GACAATATGTCTGAGGCCGACAGGGTCAATGCCGCTGCAGCGGTCGCTCAGTCTGCTATC
ACGGCAGCTCAAGCTCGCCAAATGTCCTGGACTCCGGTGTCGGTACCCGTGTTCGTGTCG
TCGACGTCTCAAGCTACTCCAGCAGTCAATGTGCCCATAGGTGACGGCAAAACGGTGTAC
TCTGCACCCGATGTTAGGACTTTTATGTATGACGAGACATCCGGTTACTACTACGACCCC
GCCACCGGCCTCTACTACGACGGGAACACGCAATACTTCTACAACAGCACCATCAATCAG
TATATGTACTGGGACGCGGCCACGTCCACGTACATCGCCGCCTCTCAGACTCAAACCAAT
TCCGATCAACCCAAGCTGCAGAACCCACCCGATCCGACGGCAGGTAACACTATCACGAAG
GAGCCAGAGGAAAAGAAAAAGAAAGATAAAGAGGACAAAGTCAAAGTAGCCAAAAAGATA
GCTAAAGATATGGAAAGGTGGGCCAAAACATTGAATCAAAAGAAAGAGAACGCTAAGAGC
AACTTTGTTATGGAACAACCTTTAGACACCAGCGCCAGTAAGGGTTCAGCCGACATTGGT
TTCTCAGTGCTGGGTGCGGGTCCTTCTTTGACTCATGTCAGAGAGTTGTCTCCTCCACCA
GTCATCTCCACAGATGATTTCCTTTTAAAAAAGAATGAACCGAACATCTTTGACATTGAC
GAGGGTATCATAGACTGGTCCAAGCTGACATGTCTTCTTTGTAAACGTAAATTCCCATCC
GTGGACGTGTTAACTAAACATAAAAATCTATCAGATTTGCATAAACAAAACCTTGCTGAG
CACAGGAAGAAGAATGAATTACTGCCACAAACGAACGGTTACAGGGACCGAGCAGCTGAG
AGGAGGATGAAGTTTGGGGAAGACGATCCTCCACCCATCAGGAAACGTTATGAAGCACCA
GAAATACATTCCCAGGTCATGTCACACCCTCCACCCTCTGTTATTGACACTATCGGTGGG
AAAATGTTGAAGAATATGGGTTGGTCGGAGGGACGAGGGCTTGGGAAAGAGGAACAGGGG
AGGATTAATCCCATTGAAGCTGAACAAAGACCGAGTTTGGCCGGACTCGGTCAGAAAAGA
GGAATTTACACTCCAACACCCGGGCTGACTTACAGAGACACTGTGAAGAAGTTGATGATC
GCTCGATACAAGGAGGTGGTCGGCCAGGAGGATGGAAGCTAG
Protein sequence:
MSWRGRDERTTRWGENRERSPVWEKRSESPDRRPPSPRDRQRDRRDRHERYDRDRRDRDR
DSERYNRRFDKRDRERDRRRSPRRLEDRDVPAAPSPPKISADYDTGEIQSRSRSGSRDRG
YKDFDHKYDRDKDDQSVNASPGDWVCKCGSYNFKRRQVCYRRNCSGKRSEGVVYGDGQTA
SECNAGITKRLLFRRLDALTTEEKILEVVKERCSKSVLDSIAGIKVGRETLTGASKCLAY
INFNSLADSTAAHSELLSLDPPLVIDNREVLISFYNEPQKTQKPHAEYPNYYNQMSSYSR
DNMSEADRVNAAAAVAQSAITAAQARQMSWTPVSVPVFVSSTSQATPAVNVPIGDGKTVY
SAPDVRTFMYDETSGYYYDPATGLYYDGNTQYFYNSTINQYMYWDAATSTYIAASQTQTN
SDQPKLQNPPDPTAGNTITKEPEEKKKKDKEDKVKVAKKIAKDMERWAKTLNQKKENAKS
NFVMEQPLDTSASKGSADIGFSVLGAGPSLTHVRELSPPPVISTDDFLLKKNEPNIFDID
EGIIDWSKLTCLLCKRKFPSVDVLTKHKNLSDLHKQNLAEHRKKNELLPQTNGYRDRAAE
RRMKFGEDDPPPIRKRYEAPEIHSQVMSHPPPSVIDTIGGKMLKNMGWSEGRGLGKEEQG
RINPIEAEQRPSLAGLGQKRGIYTPTPGLTYRDTVKKLMIARYKEVVGQEDGS