| New model in OGS2.0 | DPOGS210623 |
|---|---|
| Genomic Position | scaffold1250:+ 15173-18196 |
| See gene structure | |
| CDS Length | 1311 |
| Paired RNAseq reads | 7 |
| Single RNAseq reads | 45 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA013481 (9e-47) |
| Best Drosophila hit | spellchecker1, isoform A (1e-22) |
| Best Human hit | mutS protein homolog 5 isoform c (6e-61) |
| Best NR hit (blastp) | conserved hypothetical protein [Pediculus humanus corporis] (1e-77) |
| Best NR hit (blastx) | conserved hypothetical protein [Pediculus humanus corporis] (4e-69) |
| GeneOntology terms | GO:0007131 reciprocal meiotic recombination GO:0000166 nucleotide binding GO:0003677 DNA binding GO:0007136 meiotic prophase II GO:0006298 mismatch repair GO:0030983 mismatched DNA binding GO:0007126 meiosis GO:0005524 ATP binding |
| InterPro families | IPR000432 DNA mismatch repair protein MutS, C-terminal domain IPR007696 DNA mismatch repair protein MutS, core |
| Orthology group | MCL10906 |
Nucleotide sequence:
ATGGCGCTCTATATGAATAGGATCATAGACTTCGATGCTTCCAAGACTGAAGGCAAATTC
ACGGTGAAGGCGGGCGTCGACTCCGAGCTCGACATCAAGAAACAAACAATGGCGAGTCTT
CACGGCCTGATGACTGAGACGGCGAAGGTGGAGCTGGAGCGGCTGCCGAGCTACATCGAA
GAGTGCACCATGATGTACATGCCGCATCTGGGGTACCTGCTGGGGGTCCGGGTGTGGAGG
GACGACCTCGCGCCCGGGGACAAGGAGCTGCGACACATGAGGTTCATGTTTCAGAACAAC
GACTACATACACTACAAGAGCAAAGGATGCGAGGAGCTGGACGTGTTGCTGGGCGACACG
TACCCGGAGGTGGCGGCTCACGAGACACGCATCATGATGAGGCTGACGGCCGTACTGCTG
GAACACCTGCACACTCTCACCGACCTCGTGGACCGCTGCGCAGAGCTCGACTGTGTGATG
ACGATATCGAAGGTGTGCAAGGAGTACAGCTTCGTCCAGCCCTCGCTGACCGCGGAGAAG
AGGCTGGTGATACAGCAGGGCCGGCACCCGCTGCTGCTGGCGGCCGGCGACCCCGCCGTC
CCCAACGACCTGCGCTGCTCCGAGCACCGCGGGTACATCAAGATCATCAGCGGACCCAAC
TCCAGCGGGAAGTCCGTCTACATCAGGCAGACCGGTCTGATAGTGTACTTGGCGCACATC
GGAAGCTTCGTGCCGGCGGAAAGCGCCACCGTAGGCATCGTTACTCACATATTCTCTCGG
ATTCAATGCACGGAGAGTATCGCCACGCACATGTCCGCCTTCCTGATAGACCTCCGGCAG
ATGTCGCTAGCCGTCCGCACGTGTTCCAGCCGGTCGCTGGTGCTGGTGGAGGAGGCGGGG
GCGGGCACGGCGGCGGCTGGAGGCCTGGCGCTCCAGGCGGCCGCGATACACTCGCTGACG
TCACTCTCCCCCTTCACCCTACTAGCCACACACAGCGACCTTCGACCATACGTCATAGAC
AACACACGAGTCACGTTCATGTACATGGACTACGTGATCCGAGACGGCGAGCCCGTGTTT
CTCTACCGGGCGGTGGAGGAGGACGGAAGCCGGGGGGCGAAGACCGAGGAGGGACTGGCG
CTGCAAGTGGCGGCCTCTAGCGGGCTACCGGCCGGGGTGCTGGACAGAGCACGGGACGTA
CTGGACGCTATACGAAGTAACTCGTTGCCGCAACCCAACAGGAAGGTAATGGAGAAACTG
AACAAAATGACTGAAATAATAAAACACGAACTACAAGCGGATGACATTTAA
Protein sequence:
MALYMNRIIDFDASKTEGKFTVKAGVDSELDIKKQTMASLHGLMTETAKVELERLPSYIE
ECTMMYMPHLGYLLGVRVWRDDLAPGDKELRHMRFMFQNNDYIHYKSKGCEELDVLLGDT
YPEVAAHETRIMMRLTAVLLEHLHTLTDLVDRCAELDCVMTISKVCKEYSFVQPSLTAEK
RLVIQQGRHPLLLAAGDPAVPNDLRCSEHRGYIKIISGPNSSGKSVYIRQTGLIVYLAHI
GSFVPAESATVGIVTHIFSRIQCTESIATHMSAFLIDLRQMSLAVRTCSSRSLVLVEEAG
AGTAAAGGLALQAAAIHSLTSLSPFTLLATHSDLRPYVIDNTRVTFMYMDYVIRDGEPVF
LYRAVEEDGSRGAKTEEGLALQVAASSGLPAGVLDRARDVLDAIRSNSLPQPNRKVMEKL
NKMTEIIKHELQADDI