| New model in OGS2.0 | DPOGS207025 |
|---|---|
| Genomic Position | scaffold1:+ 1091126-1114283 |
| See gene structure | |
| CDS Length | 2661 |
| Paired RNAseq reads | 1784 |
| Single RNAseq reads | 3996 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA012967 (0.0) |
| Best Drosophila hit | RNA-binding protein 4F, isoform A (2e-15) |
| Best Human hit | squamous cell carcinoma antigen recognized by T-cells 3 (9e-60) |
| Best NR hit (blastp) | PREDICTED: hypothetical protein [Nasonia vitripennis] (2e-92) |
| Best NR hit (blastx) | PREDICTED: hypothetical protein [Nasonia vitripennis] (1e-90) |
| GeneOntology terms | GO:0005737 cytoplasm GO:0005634 nucleus GO:0003723 RNA binding GO:0005622 intracellular GO:0003676 nucleic acid binding GO:0006396 RNA processing GO:0000166 nucleotide binding GO:0008150 biological_process |
| InterPro families | IPR003107 RNA-processing protein, HAT helix IPR000504 RNA recognition motif domain IPR012677 Nucleotide-binding, alpha-beta plait |
| Orthology group | MCL12162 |
Nucleotide sequence:
ATGGCCATAGTAGAGGATGAAGTAAGAAATGGTTCTGAAGAAGAGAATGAAATCGAGGTC
GTTGTAGAGGAAGACGATCTGGACCAGGATTCCGAGGACTCGGACGATGATGACGATGAT
GAGGCAGTGGAGAAAAAAGTTGCAGATTTAGAACAAAAAATTGCAGAAGATCCCTATAAC
TATAATGATCATATTGACTTGATTCAAGCTCTCTGGACATTATCGGAACTTGACCGTTGG
AGAGCAGCTTACGATCGTCTTCAGCGGCTGTCATTGTTACGTGCTGAGCACTGGCTTTTA
AGGATTCAGACTGAAGAAACTTTGGCACATTCACCGCAGTCCAGAGAACACATCGCCAAG
TTGTTCCAACAAGCAACTCTTGATTGCTATTCCATTCCATTACTAAGCGAGTGGTGTTCA
TGGTCTTTGAGTGCGGGGGAGGCGGTGTCAGCTCGTGATCAACTGGAAGAGGTGCTGCGT
AGGGCTGGGGCCGATCCCCTCTCTGGGAAGATCTTCTGGGATGCCAAGCATGAACTGGAG
AAAGCCAAACTGGAGACCATGAACGAAGACGATCCGGAGTACAAGGAGCAGCAACAGCGT
ATCCTATGGTGTTTGGAAGAGGCTGTGTCACGACCTCTACTGAGGGGTGAAGAGGCCTGG
CCGTTGCTGCAAGAATATGTGCTGCAAGTCCACGATCAGGAATACTTGGATCAGGTTAAA
AAGCAACATGAAGCGGCCATTGAATATTTACAGAAAATTACACCGTATGAAGATAAGCTA
CTGACGATTGAGGATATTGATGAAAAATGCAAAATTTATCAAGACTACATCGATACGGTC
ATAGATTTGTCCAAAGAGAAGAGATACGTCGACTGCGACAGCAATGGCATACTGAAGGTG
CTGTATGACCGAGCGACAACCGAATGCATCTCCTGCGAAGCCTCTCACGATTTGCTACTG
GCATTGGCCAAACATGTTCAGGCTATTTCGTCTCGAGCCACCATACATCGTATCCATGAC
CTGTGTACTAGACGTTGTCCCAGGAGGCACACCTTCTGGGTGCTGAAGATGCAACAGGCT
GAACACGAGGAGAAGAGCTTTGAGGAGGTGAAGTCGCTATTCGAGACAGCGCTGTCTAAA
GGCATGGAAACTTATAAAGAAGCTGAGAAGCTCTGGATGAGTTATCTAGAGTACATCCGT
CGAGCTACGTCCTTCGATAATAAGGAGCACGTGGATAGACTGCGGCGAACATTCAGACTG
GCCTGGGACTCACTCGCTGAGGCGTGGGGAGATGAAGCCAACGACTGTGAAGTTCCACTG
TTTTGGGCTCGACTTGAATATAAACAAATTAAGGATCCCGTTCAGGGCAAGGAGATATTT
GAAGAGATATTCAAATACGGTGAAAATAAGACCCTGTCGAAGTACTGGGAGGCTCTGATT
CATCTGGAGGTGAACCGCGATCCGCCAGTCAACAAGCGTCTGAGGGATCTCCACCGTCGG
GCCCTCCGCAGTGTGAGTGATTACCCGCCAGCCGTGGCGCGGCTGTGGAGCGACTACGAG
AGGGACTGTGGGGGACTCAGCACACTCGTGGAGTGCCAGGAGATGTGTGAGCGAAAGTTG
AAAGAATGGCGCGATAATTACCAGGCCATGAAGGAAAAGATGCTAGGATACAAGCAGAAA
GGGAAACAGCAGACGAACAAGAAAATAAAAATTGATAAAGCTAAGACGGTAGATCAGAAA
TCTAACAAAGGAAAAAGAAAGTCCGATAACACTTCAGAAGAAGTTAAGGTGAAGAGGAAG
AAGGACGACAATATGGATGTTGATGAGTCAGAGAAGGACGGAGATAGTGGTGTGAAGAGA
CCACATGATGATAATGATCATGTTATAGAGACAAAGAGACCACGCAAAGACAGCTCATCA
GAAGATGCGGTGGGAAGGGAGGCTTGCACATTATTTGTGAGCAATTTGGACTTTAAATTC
AACGAAAACAATTTGAGGAACAAACTATCTGAATTCGGCGAGATTGTATCGATGAGAGTG
AGGGCTGGCGTCAAAGCCTTTGGTGGATCAATCTGTTACTGTCAATATAAGACTACTGAG
TCAGTTGATGAAGCCCTGAAACACGATAGAACAGTTCTGGACGGTAGACCGATGTTCCTA
TCACGATATTCATCTAAAAAGACCAAGCCGACATTTAAATACGCTATGACAACAGAGAAG
AACAAACTGTTTGTGAGGAATCTACCGTTCTCACACTGCACCAAAGAGGCCCTCGCTGAA
ATATTCGATAAATATGGCAAGCTGAATGACATCAGGATTGTTACTTTCAAAGACGGTAAG
CCCAAAGGTCTGGCCTATATAGACTACGAGGACGAGGAGTCAGCCTCGGTGGCCCTGTCG
AAGACCAACGGGCTTCTCGTTAAAGACAGGAATATAGAAGTGGCCGTTAGTGCCCCTCCT
CCTAAGGGAGAAACCAATGTACTTGGAAGCGTCAAACGTGATGTTGGCGGAGGAATGCGC
CGTACTCAATTGAGTAGCTTCATACCGCGGGTGTTGCAGACGCCTTCCACCAGCAAGTCC
AGTTACGCCAACACTAGCAACGGGGACTCCAAGAAACCCCTCAGCAACAGCGACTTTAGA
TCACTGTTGCTCAACAAATAG
Protein sequence:
MAIVEDEVRNGSEEENEIEVVVEEDDLDQDSEDSDDDDDDEAVEKKVADLEQKIAEDPYN
YNDHIDLIQALWTLSELDRWRAAYDRLQRLSLLRAEHWLLRIQTEETLAHSPQSREHIAK
LFQQATLDCYSIPLLSEWCSWSLSAGEAVSARDQLEEVLRRAGADPLSGKIFWDAKHELE
KAKLETMNEDDPEYKEQQQRILWCLEEAVSRPLLRGEEAWPLLQEYVLQVHDQEYLDQVK
KQHEAAIEYLQKITPYEDKLLTIEDIDEKCKIYQDYIDTVIDLSKEKRYVDCDSNGILKV
LYDRATTECISCEASHDLLLALAKHVQAISSRATIHRIHDLCTRRCPRRHTFWVLKMQQA
EHEEKSFEEVKSLFETALSKGMETYKEAEKLWMSYLEYIRRATSFDNKEHVDRLRRTFRL
AWDSLAEAWGDEANDCEVPLFWARLEYKQIKDPVQGKEIFEEIFKYGENKTLSKYWEALI
HLEVNRDPPVNKRLRDLHRRALRSVSDYPPAVARLWSDYERDCGGLSTLVECQEMCERKL
KEWRDNYQAMKEKMLGYKQKGKQQTNKKIKIDKAKTVDQKSNKGKRKSDNTSEEVKVKRK
KDDNMDVDESEKDGDSGVKRPHDDNDHVIETKRPRKDSSSEDAVGREACTLFVSNLDFKF
NENNLRNKLSEFGEIVSMRVRAGVKAFGGSICYCQYKTTESVDEALKHDRTVLDGRPMFL
SRYSSKKTKPTFKYAMTTEKNKLFVRNLPFSHCTKEALAEIFDKYGKLNDIRIVTFKDGK
PKGLAYIDYEDEESASVALSKTNGLLVKDRNIEVAVSAPPPKGETNVLGSVKRDVGGGMR
RTQLSSFIPRVLQTPSTSKSSYANTSNGDSKKPLSNSDFRSLLLNK