| New model in OGS2.0 | DPOGS207043 |
|---|---|
| Genomic Position | scaffold1:+ 1412002-1414182 |
| See gene structure | |
| CDS Length | 1245 |
| Paired RNAseq reads | 118 |
| Single RNAseq reads | 346 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA013166 (2e-43) |
| Best Drosophila hit | histone deacetylase 3 (4e-50) |
| Best Human hit | histone deacetylase 8 isoform 1 (1e-70) |
| Best NR hit (blastp) | PREDICTED: histone deacetylase 8-like [Saccoglossus kowalevskii] (1e-90) |
| Best NR hit (blastx) | PREDICTED: similar to Histone deacetylase 8 (HD8) [Acyrthosiphon pisum] (4e-86) |
| GeneOntology terms | GO:0016575 histone deacetylation GO:0004407 histone deacetylase activity GO:0045449 regulation of transcription GO:0005737 cytoplasm GO:0016568 chromatin modification GO:0046872 metal ion binding GO:0006350 transcription GO:0016787 hydrolase activity GO:0005634 nucleus |
| InterPro families | IPR003084 Histone deacetylase IPR000286 Histone deacetylase superfamily |
| Orthology group | MCL10549 |
Nucleotide sequence:
ATGGACAAAAGTAAAATAAGTTATATATGGGACAACAAATTAATTGAATGTTGTGATAGG
TTACCCGCTGTACTGGGTCGGGCTTCAATGGTGCATAGCCTTATTGTCACTTACAATTTA
TTGGATCAAATAAAAGTAGTTCGTTCCAAACCTGCTTCTTACCAAGACCTTAAACTATTT
CATACTGAAACTTATATAGAACATGTAAAAAGTTTTACCGATGTTGACGAGGATTATATG
CCAACAAAAAAAGACGAAGAATATGGTTTTGGCTACGATTGCACACCAGTATCAGATATG
TATGATATAATATCGAATATTGCTGGAGCTTCCATTACTGCAGCAGAATGTCTTCTTCGT
GGCATTGCTGATGTCTCTATAAATTGGTGTGGTGGTTGGCATCATGCTCATAAATCAAAG
GCTGAAGGTTTCTGTTATGTAAATGATATTGTGATCGCTATTGAAAAACTGAGGAAAAAA
TTTTCAAAAGTTTTATACATAGATCTCGATGTGCATCATGGCAATGGAGTGCAAGATGCC
TATGATTCAAATGAATCTGTATTTACTCTCTCATTCCATAAATATGAACCAGGTTTCTAT
CCTGGAACTGGTGCTGTCACAGATATCTCATCCAAAGCTCAAGGTTACTCTTGCAACTTT
CCATTACATGCATCATACTGTGATAAAACATTTGTACATGCTTTTAATAATATTATTGCT
GAGGTCTATTCTTATTTTAAACCTGATGTAATAGTAGTACAGTGTGGAGCTGATGCTTTG
TCTCTGGACCCACATGGGGGTGCAGGACTTACAATAAAAGGTTACTGTACATGTGTATAT
AAAATATTGCAGACAAAAAAACCTACATTACTTTTAGGAGGAGGAGGGTATAATCATGCA
AATGCTGCTAAACTTTGGACAGCTATAACAGCACATGCAGCAGATGTTACATTGGATGAG
AACATTCCAGAACATACATATTGGCCTGAATACGGACCTGGTTACACTTTGAAAGTGGAG
CCACTTTTAGCCAAAGATTTAAATACAACACAGTATATAGAGCATATTACAGCTATTATA
AAAGAAAATTTAAACAAATACCTAGGAGAATATAGATTAAGTGCTGTGTTACCCAGAAAA
AGGAAACTGGATTGGGGCAATAATTCTAAATGGAATGACAGTAAAAATGATGATCCAGAA
AACAAGACTTTAGAGACATCTGACGTTTATGAATTTAATGAATAA
Protein sequence:
MDKSKISYIWDNKLIECCDRLPAVLGRASMVHSLIVTYNLLDQIKVVRSKPASYQDLKLF
HTETYIEHVKSFTDVDEDYMPTKKDEEYGFGYDCTPVSDMYDIISNIAGASITAAECLLR
GIADVSINWCGGWHHAHKSKAEGFCYVNDIVIAIEKLRKKFSKVLYIDLDVHHGNGVQDA
YDSNESVFTLSFHKYEPGFYPGTGAVTDISSKAQGYSCNFPLHASYCDKTFVHAFNNIIA
EVYSYFKPDVIVVQCGADALSLDPHGGAGLTIKGYCTCVYKILQTKKPTLLLGGGGYNHA
NAAKLWTAITAHAADVTLDENIPEHTYWPEYGPGYTLKVEPLLAKDLNTTQYIEHITAII
KENLNKYLGEYRLSAVLPRKRKLDWGNNSKWNDSKNDDPENKTLETSDVYEFNE