| Genomic Position | scaffold9804:+ 811-3410 |
|---|---|
| See gene structure | |
| CDS Length | 2298 |
| Paired RNAseq reads | 13 |
| Single RNAseq reads | 61 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA006276 (2e-06) |
| Best Drosophila hit | ND |
| Best Human hit | ND |
| Best NR hit (blastp) | endonuclease-reverse transcriptase [Bombyx mori] (1e-176) |
| Best NR hit (blastx) | endonuclease-reverse transcriptase [Bombyx mori] (2e-164) |
| GeneOntology terms | GO:0003964 RNA-directed DNA polymerase activity GO:0006278 RNA-dependent DNA replication GO:0005622 intracellular GO:0008270 zinc ion binding GO:0003723 RNA binding |
| InterPro families | IPR005135 Endonuclease/exonuclease/phosphatase IPR000477 Reverse transcriptase |
| Orthology group | MCL10020 |
Nucleotide sequence:
ATGGGTGCGACAAAAAAGCCACGGCCCCCAGTTCTCGGCGGTCCCGCTATTCTTGGTCAT
GGTGGCGACCATGGTAACGGCGGGACGGGGGGTGCGAAGAATCTCCGGGCTACGGGAGGC
CACCAAAATAAACTGACCCTGGCGACGTACAACGGACGCACGTTACGGCTTGACGAGCAT
CTGGCGCAACTCGAGGAGGAACTTGGGAAGATTAGGTGGCACATACTAGGGTTAAGTGAA
GTCCGAAGATCGGGGGAGGACACCGTAACTCTTGAATCGGGCCACCTAATGTACTTTCGC
GAGGGAGACCAACAATCCCAAGGTGGCGTGGGGTTTTTGGTAAATAAGTCCCTATTCGAT
AGCGTTGTGGAAATGTCTAGTGTGTCGAACAGGGTAGCGTACCTCATAGTAATGCTCACC
GAGAGATTCAGCCTCAAGGTGGTGCAAGTGTACGCTCCGACCTCGACACACTCGGATGGT
GAAGTGGAAGAAATGTTCGATGATATATCGAAGGCCCTCCACTACACTACTAAGACTCAC
TACAACGTTGTTATGGGAGACTTTAACGCTAAAGTGGGAGTACGGACTTGCAACGAATCG
GTAGTAGGATCCCATGGATTTGGAAGTAGGAATCATAGGGGGCAAATGCTCGTTAACTTC
CTGGAACGAGAGGGTCTCTTCTTGATGAACTCGTTCTTCAAGAAACAGCCCCAAAGGAAG
TGGACGTGGCAAAGCCCCGATACTATGACTAAAAATGAGATCGATTTCATCATGACGGAC
AAGAAACACATATTCAGAGACGTCTCCGTGATCAACAGTCAAATCTGGAGAACCGATTCA
AAAGTGTTCGTACAATCTCTTGGAAGAAGCCACCTGACGAAGTTGACTACAGCAAGTGGA
GAAGTCGTTGCTTCAATGCCGGCAGTCCTTTCAGAAGTGGAAGACTTCTATAGCCGGCTC
TACGCATCGCAGACATCTCGGCCTGATCCCGTGTGTGAGGATCCTAGAGCCACATTAACA
CGCCACTTTTCCGAAGACCTGCCAGAAGTCAGTATTGGCGAAATTGAGATCGCTCTTGGG
CAGCTTAAAAATGGAAAAGCCCCTGGAGAGGACGGCATAACAACAGAATTGTTGAATGCC
GGAGCTAAACCCGTACTGAGGGAGCTCCAAAAGCTGTTCAATTCTGTCCTCTTCGAAGGG
AGAACTCCGGAGGCGTGGAGTAGGAGTGTGGTCATCCTGTTCTTCAAAAAGGGAGACAAA
TCCCTGCTGAAGAACTATCGACCCATTTCCCTGCTAAGCCACGTATATAAGCTGTTTTCA
AGAGTGATCACAAATCGTCTTGCGCGAAGACTCGACGAATTCCAACCACCGGAACAGGCT
GGGTTTCGGAGCGGATACGGCACCATAGACCACATTCACACGGTGCGGCAGATTATACAG
AAGACCGAAGAGTATAATCAGCCCCTTTGTCTAGCATTCGTGGACTATGAGAAAGCTTTT
GACTCGATTGAAACTTGGTCTGTTCTGGAGTCCCTGCAACGTTGCCAAGTTGATTGGCGG
TATATCCAAGTGATAAGATGTCTCTACGAAGCCGCCACCATGTCCGTCCAAGTACAGAAT
CAGCAAACAAGTCCCATACCGTTGCATCGAGGAGTGAGACAGGGGGACGTTATCTCCCCG
AAACTGTTCACAAATGCAATGGAGGATATGTTTAAGACGCTGCGCTGGAAAGGACGAGGT
ATTAACATTAATGGCGAACACATCTCTCACTTGCGATTTGCAGACGACATCGTCATTATG
GCAGAAACGCTGCAGGACCTACAACAGATGCTTGATGACCTGGCTGACTCTTCTATACGC
ATCGGCCTACGGATGAACTTGGACAAAACCAAGGACATGTTCAATGAACATGTCCTACCG
GAACCGATTGCAGTCCACCGTGTCGTTCTCGAAGTTGTTCAAAAATATGTCTATCTGGGG
CAAGTATTGCAGTTGGGTAGAAACAATTTCGAGGACGAGTATATCCAAGTGATAAGATGT
CTCTACGAAGCCGCCACCATGTCCGTCCAAGTACAGAATCAGCAAACAAGTCCCATACCG
TTGCATCGAGGAGTGAGACAAGGGGACGTTATCTCCCCGAAATTGTTCACAAATGCAATG
GAGGATATGTTTAAGACGCTGCGCTGGAAAGGACGAGGTATTAACATTAATGGCGAACAC
ATCTCTCACTTGCGATTTGCAGACGACATNNAGTGGCGTGCTATTGGAGAGGCCTATGTC
CAGCAGTGTATAGGCTGA
Protein sequence:
MGATKKPRPPVLGGPAILGHGGDHGNGGTGGAKNLRATGGHQNKLTLATYNGRTLRLDEH
LAQLEEELGKIRWHILGLSEVRRSGEDTVTLESGHLMYFREGDQQSQGGVGFLVNKSLFD
SVVEMSSVSNRVAYLIVMLTERFSLKVVQVYAPTSTHSDGEVEEMFDDISKALHYTTKTH
YNVVMGDFNAKVGVRTCNESVVGSHGFGSRNHRGQMLVNFLEREGLFLMNSFFKKQPQRK
WTWQSPDTMTKNEIDFIMTDKKHIFRDVSVINSQIWRTDSKVFVQSLGRSHLTKLTTASG
EVVASMPAVLSEVEDFYSRLYASQTSRPDPVCEDPRATLTRHFSEDLPEVSIGEIEIALG
QLKNGKAPGEDGITTELLNAGAKPVLRELQKLFNSVLFEGRTPEAWSRSVVILFFKKGDK
SLLKNYRPISLLSHVYKLFSRVITNRLARRLDEFQPPEQAGFRSGYGTIDHIHTVRQIIQ
KTEEYNQPLCLAFVDYEKAFDSIETWSVLESLQRCQVDWRYIQVIRCLYEAATMSVQVQN
QQTSPIPLHRGVRQGDVISPKLFTNAMEDMFKTLRWKGRGININGEHISHLRFADDIVIM
AETLQDLQQMLDDLADSSIRIGLRMNLDKTKDMFNEHVLPEPIAVHRVVLEVVQKYVYLG
QVLQLGRNNFEDEYIQVIRCLYEAATMSVQVQNQQTSPIPLHRGVRQGDVISPKLFTNAM
EDMFKTLRWKGRGININGEHISHLRFADDXXWRAIGEAYVQQCIG