| New model in OGS2.0 | DPOGS202785 |
|---|---|
| Genomic Position | scaffold892:- 26837-33774 |
| See gene structure | |
| CDS Length | 1971 |
| Paired RNAseq reads | 2632 |
| Single RNAseq reads | 6102 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA010463 (2e-171) |
| Best Drosophila hit | CG8001, isoform B (6e-64) |
| Best Human hit | DDB1- and CUL4-associated factor 8 (5e-74) |
| Best NR hit (blastp) | Nuclear distribution protein nudF, putative [Pediculus humanus corporis] (2e-115) |
| Best NR hit (blastx) | Nuclear distribution protein nudF, putative [Pediculus humanus corporis] (1e-100) |
| GeneOntology terms | GO:0005515 protein binding GO:0080008 CUL4 RING ubiquitin ligase complex |
| InterPro families | IPR001680 WD40 repeat IPR019781 WD40 repeat, subgroup IPR019782 WD40 repeat 2 IPR017986 WD40-repeat-containing domain IPR011046 WD40 repeat-like-containing domain IPR015943 WD40/YVTN repeat-like-containing domain |
| Orthology group | MCL11097 |
Nucleotide sequence:
ATGCAAGACAATTCCTCGAACGATGATGAAACTAAGGATTCTCCGTTGAGTCCTAAATTA
GGTGGAAAAAAACTGAAACTGAACGACGGCAGTTCACAAGACAGTAACAACGAAACTGCA
TCTGGGAGTAAAATTGTAAAGGAAGAAAACGTGGACAGCGGGGTATCAGCTGATAAGTCC
GAAAGTACGAGTAGTGACGCTGCTGCAGCCGAAGTGCCCTTGAATGAGGTCGTAACGATC
GCTCCGTCGAGCAGCAATGTCCGCGCTATACTCCTCAACATTAGACATCCGCGGCGCGCT
AGGAACTATAGAAAACGCAAGACTCCAGACAGGGAGTCCGGCAGTGATTCCTCGAGAGAT
TCAGATGATCTCTCCACCGAGGAAGCTGAAAACATTCCATTGTCATTGGATACAACTGAT
GGGGATGCAGCAACGGATTTTTCCAATGGCTCATCTAGTGAGAGCGGTCTGGACACATCA
TCAAACAGCAGCTACCACAGTGATGATCAGCTGAACACGGTGGACACAGACAGCGATGAC
CCACTGTGGTCTAGGAATGAAGAGGACGGGGAAGAGTTGACTGGGAAACCACCTCCCGTG
CTGCTCAAGACACGTCCCAAACACACATATATAATGTTAAGAGAAATAATCAATAGGGAA
ATGGGGCTGACATTTCCATGCGGCAAAACAACACAGAATGATGTGATATTTGAACAGAAC
TTCTACGGATCACTACATGCCGTGTACAGACTGGAGAAACTACACAACCTGCTGAAACAT
AGAGGCTGTGTCAACTCTATCAACTTTCATCCGGAAGGGCGTCTCCTCGCCTCCGGCTCC
GATGATATGAATGTCGTCGTATGGGATTGGGCCAAAAGAACTCCCGTACAGACGGTCAAG
ACCGGCCACAAGTCCAATGTTTTTCAGAGTAAATTTTTATATTTGAATGCTCAGAGTCAA
CTCAATATTGCGACATGTGCCAGGGATGGTCAGGTCCGCCTGGTGCAAGTGGGCGGCGGA
GGCTCCTGCCGGCGACGCCTGGCAGCCCACGCCCGCCCCGCTCACAAGCTGGCGGTGTGG
CCCTCGGACCCTCACCTGGTGCTGTCCGCCGGCGAGGACGGGCTGGTGCTGTGCGCCGAC
GTCAGAGACGACCATCCCACCAAAATGATCCACGCCAAGACTGCCGCGGGCGGTTCAGTG
TCTCTGTACAGCGTTGCGGTGCACCCTCGCTGGCGGCACGAGGTGCTGGTGGCGGGCCGG
GACAAGTTCCTCCGGGTGTACGACGCCCGGCGCCCCCAGCAGCCCCTGGCGCTGTACTGG
CCGGGGCACTTCAGAGATGAAAACACTAACGAGGGTAAATGGTCTCAACGCAAGAGGTTC
TCGATGCACCTGACCTGCGCCGTCTACAACCACGACGGCACCGAGATACTCGGATCATAC
AACGACGAGGACATCTATCTGTTTAACGCCAAAAACGATATCTATGAAGGCACGGATGAT
ACCAAGGACGGGTACACTCACAGGTACAGCGGCCACCGGAACAGTGTCACTTATAAGAGC
GTCGCTTTCTTCGGTCCGAAGAGTGAGTACATTGTGTCAGGGTCGGACTGTTCCAACATT
TATATTTGGGAGAAAAACTCTGAGGCTATAGTGCAGTGGATGAAGGGGGACTCGCATGGT
GCTGTGAACTGTATTGAAACTCACCCCCGGTTCCCGGTCATGGCCACCAGTGGCCTGGAC
ATAGACGTCAAGATATGGATACCCAAGAGAGACTCTGATCCCACATACGAAGGGATAGAA
AAAGTGGTGAGAAAGAACAGCGTGACGCCTCACAGCCGTCTGTTCAACGATTTTTTACCT
ACACTCTTTAGCGCGTGGCGCCACGAGAACAGAATGTACAGCGACAATGACGTCATCCCC
ACCTACGGCTCCAACATCGAGTTCGACGGGAACGTCTGCACGCCCTTCTAG
Protein sequence:
MQDNSSNDDETKDSPLSPKLGGKKLKLNDGSSQDSNNETASGSKIVKEENVDSGVSADKS
ESTSSDAAAAEVPLNEVVTIAPSSSNVRAILLNIRHPRRARNYRKRKTPDRESGSDSSRD
SDDLSTEEAENIPLSLDTTDGDAATDFSNGSSSESGLDTSSNSSYHSDDQLNTVDTDSDD
PLWSRNEEDGEELTGKPPPVLLKTRPKHTYIMLREIINREMGLTFPCGKTTQNDVIFEQN
FYGSLHAVYRLEKLHNLLKHRGCVNSINFHPEGRLLASGSDDMNVVVWDWAKRTPVQTVK
TGHKSNVFQSKFLYLNAQSQLNIATCARDGQVRLVQVGGGGSCRRRLAAHARPAHKLAVW
PSDPHLVLSAGEDGLVLCADVRDDHPTKMIHAKTAAGGSVSLYSVAVHPRWRHEVLVAGR
DKFLRVYDARRPQQPLALYWPGHFRDENTNEGKWSQRKRFSMHLTCAVYNHDGTEILGSY
NDEDIYLFNAKNDIYEGTDDTKDGYTHRYSGHRNSVTYKSVAFFGPKSEYIVSGSDCSNI
YIWEKNSEAIVQWMKGDSHGAVNCIETHPRFPVMATSGLDIDVKIWIPKRDSDPTYEGIE
KVVRKNSVTPHSRLFNDFLPTLFSAWRHENRMYSDNDVIPTYGSNIEFDGNVCTPF