New model in OGS2.0 | DPOGS210349  |
---|---|
Genomic Position | scaffold1154:+ 6206-11272 |
See gene structure | |
CDS Length | 3024 |
Paired RNAseq reads   | 355 |
Single RNAseq reads   | 853 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA011911 (0.0) |
Best Drosophila hit   | CG32206 (4e-141) |
Best Human hit | ND |
Best NR hit (blastp)   | PREDICTED: similar to AGAP006059-PA [Tribolium castaneum] (0.0) |
Best NR hit (blastx)   | PREDICTED: similar to AGAP006059-PA [Tribolium castaneum] (0.0) |
GeneOntology terms    | GO:0005575 cellular_component GO:0003674 molecular_function GO:0008150 biological_process |
InterPro families    | IPR002172 Low-density lipoprotein (LDL) receptor class A repeat IPR000859 CUB IPR023415 Low-density lipoprotein (LDL) receptor class A, conserved site |
Orthology group | MCL16050 |
Nucleotide sequence:
ATGTCAGCAGAAGGGAGGGTGTGGATGTGTCTGGTGCTGGCCTTGGCAGCTCTGTGGAGT
CGCGCGGCCGCCGGCGGATGTGGCGTGGCGGAGTTCACGTGCCGTAGTGGAGCTTGCGTA
CGCCTCGATGCTTACTGCGACGGCGAAACGCAATGTCCTGATGGGAGTGATGAACCGCCA
CACTGCTCGGTTTGCAATCGGACGTATTACGGACGGATCGGCGTAGCTTATGGACTGGGA
CTGCGTGGAGCGCCGAGATCTCCTTTTCTGTGTCATCTCACGTTTACCGCTGGCGGAGGA
TCCCACGGAGATCTCGTTCAACTGGCTTTCGACGAGTTCCGTGTGGGTCGCTATGAATCG
GGCGCCTTGGACGGGTGTCCTGATGGCTACATGCAGTTATCGGAACTGGGTCGTCCTTTC
ACTGGTGGCTCGTGGTGTGGTTCCGCAGAAGGTGTCGCTCTTTATTACAGTGAAACCGCA
ACAGTTACCGTATCAGTGAAGTTGTTTCGAGCTCGTCTTGGAGAACCTTTTGGTTTCAGA
CTAAGGTACAAGTTCCTTGCACAGCGTGATGCTATCGTAAGATTTGGAGCATTGGAAGCA
CCTTTGGAACGAGGGTCCGTGTCGCCTGGAACTTACTGTACGAGAACTTATGAGGAATGT
CACCGAAAAGCCTGTCGCCTCCAGAGCCCCAACTACCCCGGCATGTACCCGAGAAATGTA
ACTTGTTACTGGAGTCTGCGTCAGAAGGACATCCCGACATGCAAGCATGCTATGATATCA
GTTCGCCAGCTATATTCGCATAAAATGCAAATAAAACGTTCAATTTCGATGGCCAGTTTA
AACAAGACGGGTCGTGCGGTGCGCGCGTGGCGCGAGTGTACGGGAGAGCGAGATCGCCTC
ATTTTCTATGACGGAGCGTCTACGGACGACCCCGTGCTGGTGGAGTATTGCGGCGGGGAC
TGGCTGCCTCCGGTCACTTCCCGGGGACCAGAGATGCTGGTTGCTTTCCACTCGTCCCCA
TTTAGCGCCCCTCCGCGGGCACCCACGCCACACGCACCACTCAGAGGATTTGAACTTGAT
GTAGACGTCATTTTCGCAGATTCTGATTCTCTAGATTATTCAAGGGAAGCAAAACGTTGT
GAATTTCATGTTAAGGCTTCTTCGTCGGAGGAGGAATTTAATGCCACCACGGTAAATGTG
AGAGGTCGCCGGGGACGTTTGCATGCACCGACTCACACGCTTCCACCCAATACTACATGC
ACTTGGACATTTCATGGTCGTCCTGGTGATCTGGTCTGGATCTATTTTTCGAGTTTTACA
CATTATTCTCTCGTGGAAGGACGACGGACGGAGAGTAACGAACGTGAAGATGACGCTGCA
GTCACAGTAACTTCACGACATTTATCGGAGTATTCCCGTTCTGCTGGAGGGAGCGGCGTT
TGCGCCGTGGAGCTTCGAATTTGGGACGGTGGTGGTGTAGACGAGGCTGCTGATCTTCTG
GGTCACTACTGTGACTCTACACCCTCTCTCTGCGCTCGAGCCGCTCTCGCCAACGCCACG
CGATCTCCTCGACCATGCGCACCTCCAGATGGCTACGTATCTGCGGCTGCACTAATGTCT
CTCGCAGCTACATCACTTCCTGGTACCGCTACTCATCCCTTGGCATTCGTGATGCACTAT
GAATTTGTTGATGCTCGGTTAGAAGGTGTCCTGTTACCGATCTCGGAAACGCGTGTCCCA
GTCGAGCCAGCGGAGTGTGCGAGGAGACTTACAGTACCTGGGGTATTTTCATCTCCTCGT
AACGCATTGTGGTTCGGGCGTGGAGGTGCAAAAAGACTTCGCTGTGTATACAGATTACAA
GTTGAAAGAGCTAGTATTGAATTACGTCTTTTAGCAGCAGCTTTTGGACGAGAGCCTAAA
TGTTCTACAAGAATAGATCCCTTAACGGGACGTTCGGCATGCATTCCTGATCCTATTGAC
CCTCTTGATCTAAGACCTAGTGATGCCCCCGTTGATTTCGATTATGATGAAAATCCATTA
CGCGTACCACATTTACGGATATACGAGTCACCTTGGCCAGGATATAGAGTACCTGTAGGA
TGTATATGTGATAATAGCAGTACACCTTTGATTATATCGAGCGGTGGCCCTTCAATGGAA
TTAGAACTGGTGGCCAGCACCTTGGCAGCGAACGAGGATCACCGCCACGTACACTTCCAA
GGAGAGTGGGCCCGCGGCCCGGCCACCTCTGAGTGTGCTATAAGTCGCCGTCTGCCACCA
CCCGGGGCATCGGTGCGCCTTTTGCACCCATACAACGGGAATAAGATGTCAGAATGTGGA
GAAACGCCTTTTCTGTTAGTGGCTCGAGGTAATCGCTCAGTATTTCTTCGAATCTGGGGC
GAAGAATTGCCTGCTTCAGCTCCTACCTCCGAGGCACCATTATGTCACACAACAAATCGT
GTTTTGGTTTACGAGTCTCATTCATCAAGATTACTAAAAGCAGTCTGTCCTGGTGGCGAT
GACTCACGAACAGTCCAAGTGTTCACCGAGGAATGGTGGGCCAGAAGCATCGGTCGTGAA
GCCGCACTTATGGTGGTGTGGTCCGCAAGAGAGGCGGGATCCGCACGATTCACGTGGATG
GAGGTCTGGCGGCCGGCAGGAGCGACTCCGGGAGCTGTTAGTGGAAACATTTCTTCGTGC
GCTCACGAATGTGTGTCTCTGAGCGCTTGTATGGCGGGCGCGCTGTGGTGCGACGGTTCA
GTGGATTGCCCAGGCGGCAGTGATGAGGCCGGCGCTTGCGGGGCGGGAGCACGACTTTTG
GCAGCATTGGGTGCACCTGCGGCTGCCGGAGCAGCAGGCGCTTGCGGCGTAGCTGCGGCA
CTAGTGCTACTTGCCGCTTTAGCACTGCGCCGGCGCCGCTCTCGACGAGACAAACGCTTA
CTTGGTGCTCTGGCGGCCGGCCGCCGATTCACCGAAGAGCTTCTGTACGATGGATCACGT
ACGTCTTCAGTGACGTCATCTTGA
Protein sequence:
MSAEGRVWMCLVLALAALWSRAAAGGCGVAEFTCRSGACVRLDAYCDGETQCPDGSDEPP
HCSVCNRTYYGRIGVAYGLGLRGAPRSPFLCHLTFTAGGGSHGDLVQLAFDEFRVGRYES
GALDGCPDGYMQLSELGRPFTGGSWCGSAEGVALYYSETATVTVSVKLFRARLGEPFGFR
LRYKFLAQRDAIVRFGALEAPLERGSVSPGTYCTRTYEECHRKACRLQSPNYPGMYPRNV
TCYWSLRQKDIPTCKHAMISVRQLYSHKMQIKRSISMASLNKTGRAVRAWRECTGERDRL
IFYDGASTDDPVLVEYCGGDWLPPVTSRGPEMLVAFHSSPFSAPPRAPTPHAPLRGFELD
VDVIFADSDSLDYSREAKRCEFHVKASSSEEEFNATTVNVRGRRGRLHAPTHTLPPNTTC
TWTFHGRPGDLVWIYFSSFTHYSLVEGRRTESNEREDDAAVTVTSRHLSEYSRSAGGSGV
CAVELRIWDGGGVDEAADLLGHYCDSTPSLCARAALANATRSPRPCAPPDGYVSAAALMS
LAATSLPGTATHPLAFVMHYEFVDARLEGVLLPISETRVPVEPAECARRLTVPGVFSSPR
NALWFGRGGAKRLRCVYRLQVERASIELRLLAAAFGREPKCSTRIDPLTGRSACIPDPID
PLDLRPSDAPVDFDYDENPLRVPHLRIYESPWPGYRVPVGCICDNSSTPLIISSGGPSME
LELVASTLAANEDHRHVHFQGEWARGPATSECAISRRLPPPGASVRLLHPYNGNKMSECG
ETPFLLVARGNRSVFLRIWGEELPASAPTSEAPLCHTTNRVLVYESHSSRLLKAVCPGGD
DSRTVQVFTEEWWARSIGREAALMVVWSAREAGSARFTWMEVWRPAGATPGAVSGNISSC
AHECVSLSACMAGALWCDGSVDCPGGSDEAGACGAGARLLAALGAPAAAGAAGACGVAAA
LVLLAALALRRRRSRRDKRLLGALAAGRRFTEELLYDGSRTSSVTSS