| New model in OGS2.0 | DPOGS215731 |
|---|---|
| Genomic Position | scaffold409:+ 40176-48546 |
| See gene structure | |
| CDS Length | 2634 |
| Paired RNAseq reads | 1355 |
| Single RNAseq reads | 3540 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA003602 (4e-12) |
| Best Drosophila hit | CG9346 (1e-164) |
| Best Human hit | U2-associated protein SR140 (1e-134) |
| Best NR hit (blastp) | U2-associated SR140 protein [Nasonia vitripennis] (0.0) |
| Best NR hit (blastx) | U2-associated SR140 protein [Nasonia vitripennis] (0.0) |
| GeneOntology terms | GO:0003729 mRNA binding GO:0006396 RNA processing GO:0000166 nucleotide binding GO:0003723 RNA binding |
| InterPro families | IPR000061 SWAP/Surp IPR000504 RNA recognition motif domain IPR008942 ENTH/VHS IPR012677 Nucleotide-binding, alpha-beta plait IPR006569 RNA polymerase II, large subunit, CTD |
| Orthology group | MCL13368 |
Nucleotide sequence:
ATGAGTAGTCGTGGTTTATCTAAAAAAGAGATAGAAGAATTAAGGAAGAAAGAAGAAGAG
GAAGCTGCGGCGCACGTATTTAAGGAATTTGTTGAAACATTCCAAGAAGTGCCGAGCACC
ACATCCAAGGTCTGGGTCAAGGCTGGAACTTATGATGCCGGGGCGAGAAAGGAAGATACA
TCAGAGCGTGGTAAGCTCTACAAGCCCACATCACGCCTGGAGGAGAAGCGTAGTGCCAGC
GAGGCGGATGTGGTCCGTAGCCTGGCTCGGTCCGACCCGCCCGGACGACCCAAGAAGAAG
AGCGGAGACAAGAAGAAAAGCAACCTAGAACTGTTCAAGGAGGAGCTCAGGCAGATCCAG
GAGGAGCGCTCAGAACGTCACAAGTACAAGAACGTGCTGAGGGACCGAGGAGTGGGGGTA
CCCGAGCCAGTGATTGACGTCATCCCCGACGTGGGCTCCTACGACACTGGCGACCCCAAC
ACCACCAACCTGTACCTGGGGAACTTGAACCCAAAGATAACAGAGCAGCAGTTGATGGAG
ATCTTCGGTCGGTACGGTCCGCTGGCCAGCATCAAGATCATGTGGCCTCGCTCCGACGAG
GAGAAGGCGCGCGGCAGGAACTGCGGGTTCGTGGCGTTCATGTCCAGGAAGGACGGAGAG
AGGGCGCTGAGGTGCATCAATGGAAAGGAGATAATGAACTATGAGATGAAGCTGGGTTGG
GGCAAGGCGGTGGTGATTCCTCCGCAACCCTGCAAGCCTCCCCCGCCCTCCGGGCTGCCT
TTCAACGCTCAGCCGCCCAGACACCTCGCCAACAAGATACCGAGGATCCGTCCGGGTGAA
TACTACCCGAGCGACTCCGGCGACAAACAACTGTACGATCAGATATTATCCCAATCCATA
GTCAAAGTCGTCATTCCGACTGAAAGGAACATCCTGATGCTGATCCACCGTATGGTGGAG
TTCGTGATCCGCGAGGGGCCGATGTTCGAGGCCATCATCATGAACAAGGAGATGAACAAC
CCCTACTTCCGGTTCCTGTTCGAGAACCAGTCGCCCGCACACGTGTACTACAGGTGGAAA
CTGTTCTCCATGCTGCAGGGGGACTCGCCCAAGTCCTGGAACCTCGAGGACTTCAGGATG
TTCAAAGGTGGTTCCGTGTGGCGTCCGCCCGTCATGAACCTGTACACGGCCGGCATGCCC
GACGAGCTCGTGGACGAAGAGGACGCCAAGGAAAACATCCGAGGAACGCTCTCCAACAAT
CAGCGCGACCGTCTGGAGGAGTTGATCCGCAACCTGTCGCCGGCCCGCCGCAGCGTGGGC
GAGGCCATGGCGTGGTGCCTGGAGCACGCGGAGGCGGCGGGCGAGGTGCCGTGCTGCGTG
AGCGAGGCGCTGTCCCAGCCGCGCACCACGCCCGCCCGCCGCGTGGCCCGCCTCTACCTG
CTGTCCGACATCCTGCACAACGCCGGCGCCAAGCTCACTAACGCCAGCGCCTATCGCGGA
GCGTTCCAATCTCGTCTGGTGGACATCATGCGCGAGTGTCGCGTGGCGTGGACCCGGATG
TCGTCTCGCATGCAGCAGGAGGGCTTCCGGGCGCGCGTCACACGCATCCTGCAGGCCTGG
GCCGACTGGGCCGTCTACCCCACAGACTTTCTGCTGCACATCAACGACGTCTTCCTCGGA
CAGAATAAGGAGGGCGAGACGCGTCCGACCCTTGAGGTCGATCGTGACGAGGGGGACGAG
GACGGTAACGCCTCCCCGGGGTCCTCCGCCTCGGGCGCCTCTGGCGGCTCCGGGGGTTCC
GGGGGCTCCGGCCCGCTGGACGGAGCCGCGCTCAGGAGACTCGCTGAACAGAGACCGCCA
CAACTTAATATATCTGGCCTTCAATTGCTGCTGTATGACGGTGTGCCGGTTGACGAAGAC
ATAGACGGCGTTCCGCTGGACACGGAGGAGTGTTCTGCGGCCGAGGGCTCGAGCGTCGGT
CGCAGTACGGCCGCGTTCGTGCCCTCGCGCTGGGAGAGCGTCGACCCCGCGCCCTCCACA
CACTCCAGGGACGACTCGCCGCCCAAAGACAGCTCTGATGCGGAGCGTTCGAGTCAATTC
ACTAGCACGGGTGTAGGGGGGGTGGGGGGAGACTGCGGCGAGGGGGCGCTGAGGAGAGAA
ACACTGAGGGATATAGAGGTCCGGGTGTTGAAGTACGCGGACGAGTTGGAGGCGGGCCTC
AGGCCTAGCAAGTCAGGCCTGCCACACGCGCAGCAGATACAACAACACAGGAAGAAACTC
ATCAGGAAGGCTCTCCGTGAGGCGAAGGAGGCTCGCGAGGCCGAGGAGCCCCTCTCCCCA
GAGGACGACACATTCTCCACCAGCTCCCGGAAGTCGAAGAAGTCGCGGGAACCGTCCATG
TCGCCGCCCACCAAGAGGAACAGGCCGGGAGATCGAAAATCAAGATCAAAGTCGAGATCA
CGCGAACGAGATAGAGAACGAGAGAGGTCTCGAGATAGAGATCGCGAGAGAGAAAGAGAA
AGAGACAGAGATAGAGAACGCGACAGAGACAGAGATAGGGAGAGACGGAGGCGGTCGCCG
AGCACGCCGCCCCATCACAGGAAACACGCGAAGCACAGTAAATATAAGTACTAG
Protein sequence:
MSSRGLSKKEIEELRKKEEEEAAAHVFKEFVETFQEVPSTTSKVWVKAGTYDAGARKEDT
SERGKLYKPTSRLEEKRSASEADVVRSLARSDPPGRPKKKSGDKKKSNLELFKEELRQIQ
EERSERHKYKNVLRDRGVGVPEPVIDVIPDVGSYDTGDPNTTNLYLGNLNPKITEQQLME
IFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMSRKDGERALRCINGKEIMNYEMKLGW
GKAVVIPPQPCKPPPPSGLPFNAQPPRHLANKIPRIRPGEYYPSDSGDKQLYDQILSQSI
VKVVIPTERNILMLIHRMVEFVIREGPMFEAIIMNKEMNNPYFRFLFENQSPAHVYYRWK
LFSMLQGDSPKSWNLEDFRMFKGGSVWRPPVMNLYTAGMPDELVDEEDAKENIRGTLSNN
QRDRLEELIRNLSPARRSVGEAMAWCLEHAEAAGEVPCCVSEALSQPRTTPARRVARLYL
LSDILHNAGAKLTNASAYRGAFQSRLVDIMRECRVAWTRMSSRMQQEGFRARVTRILQAW
ADWAVYPTDFLLHINDVFLGQNKEGETRPTLEVDRDEGDEDGNASPGSSASGASGGSGGS
GGSGPLDGAALRRLAEQRPPQLNISGLQLLLYDGVPVDEDIDGVPLDTEECSAAEGSSVG
RSTAAFVPSRWESVDPAPSTHSRDDSPPKDSSDAERSSQFTSTGVGGVGGDCGEGALRRE
TLRDIEVRVLKYADELEAGLRPSKSGLPHAQQIQQHRKKLIRKALREAKEAREAEEPLSP
EDDTFSTSSRKSKKSREPSMSPPTKRNRPGDRKSRSKSRSRERDRERERSRDRDRERERE
RDRDRERDRDRDRERRRRSPSTPPHHRKHAKHSKYKY